X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPdb.java;h=3fd7541fb25fbb2fa76efe29f634e16b823dca3e;hb=a6b324e3f5edac3df0b968f0037b1cc8b651598e;hp=7f8c76ca6430a00149fc412d4a7499b04993f17c;hpb=5b079109d33a4596a8c3017dbf93b7de5b0300c5;p=jalview.git

diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java
index 7f8c76c..3fd7541 100644
--- a/src/jalview/ws/dbsources/Pdb.java
+++ b/src/jalview/ws/dbsources/Pdb.java
@@ -29,7 +29,6 @@ import jalview.datamodel.SequenceI;
 import jalview.io.FormatAdapter;
 import jalview.util.MessageManager;
 import jalview.ws.ebi.EBIFetchClient;
-import jalview.ws.seqfetcher.DbSourceProxy;
 
 import java.util.ArrayList;
 import java.util.List;
@@ -41,12 +40,11 @@ import com.stevesoft.pat.Regex;
  * @author JimP
  * 
  */
-public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
+public class Pdb extends EbiFileRetrievedProxy
 {
   public Pdb()
   {
     super();
-    addDbSourceProperty(DBRefSource.PROTSEQDB);
   }
 
   /*
@@ -54,6 +52,7 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getAccessionSeparator()
    */
+  @Override
   public String getAccessionSeparator()
   {
     // TODO Auto-generated method stub
@@ -65,6 +64,7 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getAccessionValidator()
    */
+  @Override
   public Regex getAccessionValidator()
   {
     return new Regex("([1-9][0-9A-Za-z]{3}):?([ _A-Za-z0-9]?)");
@@ -75,6 +75,7 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getDbSource()
    */
+  @Override
   public String getDbSource()
   {
     return DBRefSource.PDB;
@@ -85,6 +86,7 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getDbVersion()
    */
+  @Override
   public String getDbVersion()
   {
     return "0";
@@ -95,6 +97,7 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#getSequenceRecords(java.lang.String[])
    */
+  @Override
   public AlignmentI getSequenceRecords(String queries) throws Exception
   {
     AlignmentI pdbAlignment = null;
@@ -219,6 +222,7 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
    * 
    * @see jalview.ws.DbSourceProxy#isValidReference(java.lang.String)
    */
+  @Override
   public boolean isValidReference(String accession)
   {
     Regex r = getAccessionValidator();
@@ -228,11 +232,13 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
   /**
    * obtain human glyoxalase chain A sequence
    */
+  @Override
   public String getTestQuery()
   {
     return "1QIPA";
   }
 
+  @Override
   public String getDbName()
   {
     return "PDB"; // getDbSource();