X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPdb.java;h=d12c2719087e5c707fdffbde1eb11ca369c62f92;hb=990ed4ffbaa7a95b2ebb6bf6ab0440310f6e83ab;hp=a658089a47fa6deed99befd0aa37edbdcbadf493;hpb=a8e0667a62546cdd95d44a45cf14a629cfa416a6;p=jalview.git diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java index a658089..d12c271 100644 --- a/src/jalview/ws/dbsources/Pdb.java +++ b/src/jalview/ws/dbsources/Pdb.java @@ -36,6 +36,7 @@ import jalview.io.FormatAdapter; import jalview.io.PDBFeatureSettings; import jalview.structure.StructureImportSettings; import jalview.util.MessageManager; +import jalview.util.Platform; import jalview.ws.ebi.EBIFetchClient; import java.io.File; @@ -56,6 +57,8 @@ public class Pdb extends EbiFileRetrievedProxy private static final int PDB_ID_LENGTH = 4; + private static Regex ACCESSION_REGEX; + public Pdb() { super(); @@ -80,7 +83,12 @@ public class Pdb extends EbiFileRetrievedProxy @Override public Regex getAccessionValidator() { - return new Regex("([1-9][0-9A-Za-z]{3}):?([ _A-Za-z0-9]?)"); + if (ACCESSION_REGEX == null) + { + ACCESSION_REGEX = Platform + .newRegex("([1-9][0-9A-Za-z]{3}):?([ _A-Za-z0-9]?)", null); + } + return ACCESSION_REGEX; } /* @@ -169,7 +177,7 @@ public class Pdb extends EbiFileRetrievedProxy fileFormat); if (pdbAlignment != null) { - List toremove = new ArrayList(); + List toremove = new ArrayList<>(); for (SequenceI pdbcs : pdbAlignment.getSequences()) { String chid = null;