X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FRfam.java;fp=src%2Fjalview%2Fws%2Fdbsources%2FRfam.java;h=51edb054b7c834aae74fec996a8cc0568f50c874;hb=948bd3bcbacc509da0cefaae3eedd97300a6ccce;hp=97f73d0c37b7879d0c5c76f3ba51d2af256bed3f;hpb=3699e0fd64de573799a6cd2fd78da5dfc670d98e;p=jalview.git diff --git a/src/jalview/ws/dbsources/Rfam.java b/src/jalview/ws/dbsources/Rfam.java index 97f73d0..51edb05 100644 --- a/src/jalview/ws/dbsources/Rfam.java +++ b/src/jalview/ws/dbsources/Rfam.java @@ -20,6 +20,7 @@ */ package jalview.ws.dbsources; +import jalview.bin.Cache; import jalview.datamodel.DBRefSource; import com.stevesoft.pat.Regex; @@ -31,6 +32,15 @@ import com.stevesoft.pat.Regex; */ abstract public class Rfam extends Xfam { + private static final String RFAM_BASEURL_KEY = "RFAM_BASEURL"; + + private static final String DEFAULT_RFAM_BASEURL = "https://rfam.xfam.org"; + + @Override + protected String getURLPrefix() + { + return Cache.getDefault(RFAM_BASEURL_KEY, DEFAULT_RFAM_BASEURL); + } public Rfam() { @@ -46,7 +56,6 @@ abstract public class Rfam extends Xfam @Override public String getAccessionSeparator() { - // TODO Auto-generated method stub return null; } @@ -58,7 +67,6 @@ abstract public class Rfam extends Xfam @Override public Regex getAccessionValidator() { - // TODO Auto-generated method stub return null; } @@ -82,18 +90,9 @@ abstract public class Rfam extends Xfam @Override public String getDbVersion() { - // TODO Auto-generated method stub return null; } - /** - * Returns base URL for selected Rfam alignment type - * - * @return RFAM URL stub for this DbSource - */ - @Override - protected abstract String getXFAMURL(); - /* * (non-Javadoc) *