X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FUniprot.java;fp=src%2Fjalview%2Fws%2Fdbsources%2FUniprot.java;h=274ad3248e81f57142e07e2a956d93d2cbd7377c;hb=11f6e7a63cc627f5dffb0dd382343bd99d15121c;hp=fc4f31814ffc57ef0c32adc1b81fa09823939b40;hpb=be77f1e015d9b97391e23541850f37ea03b41b9b;p=jalview.git

diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java
index fc4f318..274ad32 100644
--- a/src/jalview/ws/dbsources/Uniprot.java
+++ b/src/jalview/ws/dbsources/Uniprot.java
@@ -316,10 +316,18 @@ public class Uniprot extends DbSourceProxyImpl
       int p = 0;
       for (String var : variants)
       {
+        // TODO proper HGVC nomenclature for delins structural variations
         sb.append("p.");
-        String orig3 = ResidueProperties.aa2Triplet.get(orig);
-        sb.append(orig3 == null ? orig : StringUtils.toSentenceCase(orig3));
+        for (int c = 0, clen = orig.length(); c < clen; c++)
+        {
+          char origchar = orig.charAt(c);
+          String orig3 = ResidueProperties.aa2Triplet.get("" + origchar);
+          sb.append(orig3 == null ? origchar
+                  : StringUtils.toSentenceCase(orig3));
+        }
+
         sb.append(Integer.toString(uf.getPosition()));
+
         for (int c = 0, clen = var.length(); c < clen; c++)
         {
           char varchar = var.charAt(c);
@@ -330,7 +338,7 @@ public class Uniprot extends DbSourceProxyImpl
         }
         if (++p != variants.size())
         {
-          sb.append("<br/>");
+          sb.append("\n");
         }
         else
         {