X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FUniprot.java;h=02da009c5f975a3d3d7f09d97db7c532a56908a7;hb=a6b324e3f5edac3df0b968f0037b1cc8b651598e;hp=843828b16f9da51bee051434dcce48ccfb4c66ef;hpb=5b079109d33a4596a8c3017dbf93b7de5b0300c5;p=jalview.git

diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java
index 843828b..02da009 100644
--- a/src/jalview/ws/dbsources/Uniprot.java
+++ b/src/jalview/ws/dbsources/Uniprot.java
@@ -31,15 +31,16 @@ import jalview.datamodel.SequenceI;
 import jalview.datamodel.UniprotEntry;
 import jalview.datamodel.UniprotFile;
 import jalview.ws.ebi.EBIFetchClient;
-import jalview.ws.seqfetcher.DbSourceProxy;
 import jalview.ws.seqfetcher.DbSourceProxyImpl;
 
 import java.io.File;
 import java.io.FileReader;
 import java.io.Reader;
+import java.net.URL;
 import java.util.ArrayList;
 import java.util.Vector;
 
+import org.exolab.castor.mapping.Mapping;
 import org.exolab.castor.xml.Unmarshaller;
 
 import com.stevesoft.pat.Regex;
@@ -48,12 +49,14 @@ import com.stevesoft.pat.Regex;
  * @author JimP
  * 
  */
-public class Uniprot extends DbSourceProxyImpl implements DbSourceProxy
+public class Uniprot extends DbSourceProxyImpl
 {
-
   private static final String BAR_DELIMITER = "|";
 
-  private static org.exolab.castor.mapping.Mapping map;
+  /*
+   * Castor mapping loaded from uniprot_mapping.xml
+   */
+  private static Mapping map;
 
   /**
    * Constructor
@@ -61,8 +64,6 @@ public class Uniprot extends DbSourceProxyImpl implements DbSourceProxy
   public Uniprot()
   {
     super();
-    addDbSourceProperty(DBRefSource.SEQDB, DBRefSource.SEQDB);
-    addDbSourceProperty(DBRefSource.PROTSEQDB);
   }
 
   /*
@@ -125,9 +126,8 @@ public class Uniprot extends DbSourceProxyImpl implements DbSourceProxy
       if (map == null)
       {
         // 1. Load the mapping information from the file
-        map = new org.exolab.castor.mapping.Mapping(uni.getClass()
-                .getClassLoader());
-        java.net.URL url = getClass().getResource("/uniprot_mapping.xml");
+        map = new Mapping(uni.getClass().getClassLoader());
+        URL url = getClass().getResource("/uniprot_mapping.xml");
         map.loadMapping(url);
       }