X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2Fdas%2Fdatamodel%2FJalviewSource.java;fp=src%2Fjalview%2Fws%2Fdbsources%2Fdas%2Fdatamodel%2FJalviewSource.java;h=07ba027c2c14dd4a4502298f6076f4b38e1586e3;hb=daf64249356f9a156423bd56ab0336d9da2e5325;hp=9cc423979d35ddf965e856f0f895cb33eae80779;hpb=4f9c22055c3cdbfc9c4375dcb74755a89ec32b62;p=jalview.git diff --git a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java index 9cc4239..07ba027 100644 --- a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java +++ b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java @@ -216,9 +216,8 @@ public class JalviewSource implements jalviewSourceI { for (CAPABILITY p : getVersion().getCAPABILITY()) { - if (p.getType().equalsIgnoreCase(capability.getName()) - || p.getType().equalsIgnoreCase( - "das1:" + capability.getName())) + if (p.getType().equalsIgnoreCase(capability.getName()) || p.getType() + .equalsIgnoreCase("das1:" + capability.getName())) { return p; } @@ -258,10 +257,9 @@ public class JalviewSource implements jalviewSourceI for (COORDINATES cs : v.getCOORDINATES()) { COORDINATES ltst = latestc.get(cs.getUri()); - if (ltst == null - || ltst.getVersion() == null - || (ltst.getVersion() != null && cs.getVersion() != null && isLaterThan( - ltst.getVersion(), cs.getVersion()))) + if (ltst == null || ltst.getVersion() == null + || (ltst.getVersion() != null && cs.getVersion() != null + && isLaterThan(ltst.getVersion(), cs.getVersion()))) { latestc.put(cs.getUri(), cs); } @@ -279,10 +277,13 @@ public class JalviewSource implements jalviewSourceI */ try { - seqsources.add(ds = new DasSequenceSource(getTitle() + " (" - + cs.getAuthority() + " " + cs.getSource() - + (cs.getVersion() != null ? " " + cs.getVersion() : "") - + ")", cs.getAuthority(), source, v, cs, connprov)); + seqsources.add(ds = new DasSequenceSource( + getTitle() + " (" + cs.getAuthority() + " " + + cs.getSource() + + (cs.getVersion() != null ? " " + cs.getVersion() + : "") + + ")", + cs.getAuthority(), source, v, cs, connprov)); if (seqsources.size() > 1) { System.err.println("Added another sequence DB source for " @@ -301,8 +302,8 @@ public class JalviewSource implements jalviewSourceI { try { - seqsources.add(new DasSequenceSource(getTitle(), getTitle(), - source, getVersion(), null, connprov)); + seqsources.add(new DasSequenceSource(getTitle(), getTitle(), source, + getVersion(), null, connprov)); } catch (Exception e) { // TODO Auto-generated catch block @@ -342,14 +343,14 @@ public class JalviewSource implements jalviewSourceI for (CAPABILITY cap : getVersion().getCAPABILITY()) { - String capname = cap.getType().substring( - cap.getType().indexOf(":") + 1); + String capname = cap.getType() + .substring(cap.getType().indexOf(":") + 1); int p = cap.getQueryUri().lastIndexOf(capname); if (p < -1) { throw new Exception(MessageManager.formatMessage( - "exception.invalid_das_source", - new String[] { source.getUri() })); + "exception.invalid_das_source", new String[] + { source.getUri() })); } if (cap.getQueryUri().charAt(p) == '/') { @@ -369,8 +370,8 @@ public class JalviewSource implements jalviewSourceI @Override public boolean isNewerThan(jalviewSourceI other) { - return isLaterThan(getVersion().getCreated(), other.getVersion() - .getCreated()); + return isLaterThan(getVersion().getCreated(), + other.getVersion().getCreated()); } @Override