X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FDiscoverer.java;fp=src%2Fjalview%2Fws%2Fjws1%2FDiscoverer.java;h=ba4054e27164a9bea8166ec8d8350ef9fb3f373b;hb=2595e9d4ee0dbbd3406a98c4e49a61ccde806479;hp=4643119d3e629d97796bca707397455a6f09310d;hpb=e20075ba805d744d7cc4976e2b8d5e5840fb0a8d;p=jalview.git diff --git a/src/jalview/ws/jws1/Discoverer.java b/src/jalview/ws/jws1/Discoverer.java index 4643119..ba4054e 100644 --- a/src/jalview/ws/jws1/Discoverer.java +++ b/src/jalview/ws/jws1/Discoverer.java @@ -20,14 +20,13 @@ */ package jalview.ws.jws1; +import jalview.gui.JvOptionPane; import jalview.util.MessageManager; import java.util.Hashtable; import java.util.StringTokenizer; import java.util.Vector; -import javax.swing.JOptionPane; - import ext.vamsas.IRegistry; import ext.vamsas.IRegistryServiceLocator; import ext.vamsas.RegistryServiceSoapBindingStub; @@ -223,7 +222,7 @@ public class Discoverer implements Runnable + "\nNucleic Acids Research, Web Server issue (first published 15th April 2015)" + "\ndoi://10.1093/nar/gkv332", "http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred", - "JNet Secondary Structure Prediction") }; + "JPred Secondary Structure Prediction") }; services = new Hashtable(); serviceList = new Vector(); buildServiceLists(defServices, serviceList, services); @@ -255,11 +254,11 @@ public class Discoverer implements Runnable { if (jalview.gui.Desktop.desktop != null) { - JOptionPane.showMessageDialog(jalview.gui.Desktop.desktop, + JvOptionPane.showMessageDialog(jalview.gui.Desktop.desktop, MessageManager.getString("label.set_proxy_settings"), MessageManager .getString("label.proxy_authorization_failed"), - JOptionPane.WARNING_MESSAGE); + JvOptionPane.WARNING_MESSAGE); } } else @@ -383,11 +382,13 @@ public class Discoverer implements Runnable /** * creates a new thread to call discoverServices() */ + @Override public void run() { final Discoverer discoverer = this; Thread discoverThread = new Thread() { + @Override public void run() { discoverer.doDiscovery();