X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FJPredThread.java;h=a8a49d09a70a1a84edd5b2ba123f6806bf12a077;hb=5e419a000966d26e122d6a5ac0a29f93fa5e9600;hp=62566cf7ffe7bb07e17d946dce18be977d21d459;hpb=0b38c8bc31d41cad53d87d8cc0be5b1d878ceea6;p=jalview.git

diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java
index 62566cf..a8a49d0 100644
--- a/src/jalview/ws/jws1/JPredThread.java
+++ b/src/jalview/ws/jws1/JPredThread.java
@@ -586,6 +586,8 @@ class JPredThread extends JWS1Thread implements WSClientI
         if (newWindow)
         {
           AlignFrame af;
+          ((AlignmentI) res[0]).setSeqrep(((AlignmentI) res[0])
+                  .getSequenceAt(0));
           if (input == null)
           {
             if (res[1] != null)