X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FJws2Client.java;fp=src%2Fjalview%2Fws%2Fjws2%2FJws2Client.java;h=71ba1b97aa274b04c34aa18e2f834f229c1a707a;hb=6a44ba8cd68f29329876560cfe24403fe3e7a565;hp=0f1a25e6fc1e8907c51e3093346d026483a5d894;hpb=9e97e05a07a7b5b58b54431325c663f2df31cd06;p=jalview.git

diff --git a/src/jalview/ws/jws2/Jws2Client.java b/src/jalview/ws/jws2/Jws2Client.java
index 0f1a25e..71ba1b9 100644
--- a/src/jalview/ws/jws2/Jws2Client.java
+++ b/src/jalview/ws/jws2/Jws2Client.java
@@ -20,6 +20,17 @@
  */
 package jalview.ws.jws2;
 
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.List;
+
+import javax.swing.JCheckBoxMenuItem;
+import javax.swing.JMenu;
+import javax.swing.JMenuItem;
+import javax.swing.event.MenuEvent;
+import javax.swing.event.MenuListener;
+
+import compbio.metadata.Argument;
 import jalview.api.AlignCalcWorkerI;
 import jalview.bin.Cache;
 import jalview.gui.AlignFrame;
@@ -34,18 +45,6 @@ import jalview.ws.jws2.jabaws2.Jws2Instance;
 import jalview.ws.params.WsParamSetI;
 import jalview.ws.uimodel.AlignAnalysisUIText;
 
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.util.List;
-
-import javax.swing.JCheckBoxMenuItem;
-import javax.swing.JMenu;
-import javax.swing.JMenuItem;
-import javax.swing.event.MenuEvent;
-import javax.swing.event.MenuListener;
-
-import compbio.metadata.Argument;
-
 /**
  * provides metadata for a jabaws2 service instance - resolves names, etc.
  * 
@@ -122,9 +121,10 @@ public abstract class Jws2Client extends jalview.ws.WSClient
       WsParamSetI prset = jobParams.getPreset();
       if (prset == null)
       {
-        paramset = jobParams.isServiceDefaults() ? null
-                : JabaParamStore
-                        .getJabafromJwsArgs(jobParams.getJobParams());
+        paramset =
+                /* JAL-3739 always take values from input form */
+                /* jobParams.isServiceDefaults() ? null : */
+                JabaParamStore.getJabafromJwsArgs(jobParams.getJobParams());
         this.preset = null;
       }
       else