X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fseqfetcher%2FASequenceFetcher.java;fp=src%2Fjalview%2Fws%2Fseqfetcher%2FASequenceFetcher.java;h=0d0a31450aae9d1da74b8dafd6d721a76b2a9019;hb=9949854f4c2dc75980f15acdee69594ca6b22631;hp=2a27ccedd4142254485168d945ac60a4f0d9c684;hpb=cfba86992cd64bb0df6105bbf5dfc076ba8a93b2;p=jalview.git diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java index 2a27cce..0d0a314 100644 --- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java +++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java @@ -21,7 +21,7 @@ package jalview.ws.seqfetcher; import jalview.api.FeatureSettingsModelI; -import jalview.bin.Cache; +import jalview.bin.Console; import jalview.datamodel.AlignmentI; import jalview.datamodel.DBRefEntry; import jalview.datamodel.SequenceI; @@ -112,7 +112,7 @@ public class ASequenceFetcher return true; } } - Cache.log.warn("isFetchable doesn't know about '" + source + "'"); + Console.warn("isFetchable doesn't know about '" + source + "'"); return false; } @@ -208,7 +208,8 @@ public class ASequenceFetcher // BH 2015.01.25 check about version/accessid being null here List frefs = DBRefUtils.searchRefs( seqs[is].getDBRefs(), - new DBRefEntry(db, null, null), DBRefUtils.SEARCH_MODE_FULL); + new DBRefEntry(db, null, null), + DBRefUtils.SEARCH_MODE_FULL); for (DBRefEntry dbr : frefs) { queriesFound.add(dbr.getAccessionId()); @@ -365,8 +366,7 @@ public class ASequenceFetcher .get(proxy.getDbSource()); if (slist == null) { - fetchableDbs.put(proxy.getDbSource(), - slist = new Hashtable<>()); + fetchableDbs.put(proxy.getDbSource(), slist = new Hashtable<>()); } slist.put(proxy.getDbName(), proxy); }