X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fsifts%2FSiftsClient.java;fp=src%2Fjalview%2Fws%2Fsifts%2FSiftsClient.java;h=0c707e5c18a9951715d83a84b55925244feea0f6;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=5a03aea7f13c128a57b26a70cf26f719e3cee897;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git diff --git a/src/jalview/ws/sifts/SiftsClient.java b/src/jalview/ws/sifts/SiftsClient.java index 5a03aea..0c707e5 100644 --- a/src/jalview/ws/sifts/SiftsClient.java +++ b/src/jalview/ws/sifts/SiftsClient.java @@ -432,8 +432,8 @@ public class SiftsClient implements SiftsClientI .getMapRegion(); for (MapRegion mapRegion : mapRegions) { - accessions - .add(mapRegion.getDb().getDbAccessionId().toLowerCase(Locale.ROOT)); + accessions.add(mapRegion.getDb().getDbAccessionId() + .toLowerCase(Locale.ROOT)); } } } @@ -503,9 +503,11 @@ public class SiftsClient implements SiftsClientI HashSet dbRefAccessionIdsString = new HashSet(); for (DBRefEntry dbref : seq.getDBRefs()) { - dbRefAccessionIdsString.add(dbref.getAccessionId().toLowerCase(Locale.ROOT)); + dbRefAccessionIdsString + .add(dbref.getAccessionId().toLowerCase(Locale.ROOT)); } - dbRefAccessionIdsString.add(sourceDBRef.getAccessionId().toLowerCase(Locale.ROOT)); + dbRefAccessionIdsString + .add(sourceDBRef.getAccessionId().toLowerCase(Locale.ROOT)); curDBRefAccessionIdsString = dbRefAccessionIdsString; curSourceDBRef = sourceDBRef.getAccessionId(); @@ -893,7 +895,8 @@ public class SiftsClient implements SiftsClientI { boolean isStrictMatch = true; return isStrictMatch ? curSourceDBRef.equalsIgnoreCase(accession) - : curDBRefAccessionIdsString.contains(accession.toLowerCase(Locale.ROOT)); + : curDBRefAccessionIdsString + .contains(accession.toLowerCase(Locale.ROOT)); } private boolean isFoundInSiftsEntry(String accessionId)