X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fslivkaws%2FSlivkaMsaServiceInstance.java;fp=src%2Fjalview%2Fws%2Fslivkaws%2FSlivkaMsaServiceInstance.java;h=8d6332c13311a1da0f5e67578bec37901189df96;hb=b6bd3fa646b6728cd59c8d0de91270ab6c70f86f;hp=93c0bdbb744813007abbd01dddb59272b3d22d96;hpb=7e4b1da6e7cba557bb9d8e78fcd82b836d5f2d98;p=jalview.git

diff --git a/src/jalview/ws/slivkaws/SlivkaMsaServiceInstance.java b/src/jalview/ws/slivkaws/SlivkaMsaServiceInstance.java
index 93c0bdb..8d6332c 100644
--- a/src/jalview/ws/slivkaws/SlivkaMsaServiceInstance.java
+++ b/src/jalview/ws/slivkaws/SlivkaMsaServiceInstance.java
@@ -2,9 +2,6 @@ package jalview.ws.slivkaws;
 
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
-import jalview.io.DataSourceType;
-import jalview.io.FileFormat;
-import jalview.io.FormatAdapter;
 import jalview.ws.api.JobId;
 import jalview.ws.api.MultipleSequenceAlignmentI;
 import jalview.ws.params.ArgumentI;
@@ -16,7 +13,6 @@ import java.io.IOException;
 import java.rmi.ServerError;
 import java.util.List;
 
-import compbio.data.msa.Category;
 import uk.ac.dundee.compbio.slivkaclient.RemoteFile;
 import uk.ac.dundee.compbio.slivkaclient.SlivkaClient;
 import uk.ac.dundee.compbio.slivkaclient.SlivkaService;
@@ -42,10 +38,10 @@ public class SlivkaMsaServiceInstance extends SlivkaWSInstance implements Multip
       List<RemoteFile> files = client.getJobResults(jobId.getJobId());
       for (RemoteFile f : files)
       {
-        if (f.getMimeType().equals("application/clustal") 
-            || f.getMimeType().equals("application/fasta"))
+        var aln = readAlignment(f);
+        if (aln != null)
         {
-          return readAlignment(f);
+          return aln;
         }
       }
     } catch (IOException e)