X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fslivkaws%2FSlivkaWSInstance.java;h=0c71c35ffdda0cef5ce1dfc588ae70f192a192d2;hb=65c32aa39e51d66319b48f0783ef152b07cd5d8e;hp=658d99e52162a45eaff7016630286fe3dce00d94;hpb=d93853ac01781d719baad0b13bacb65a6e3b8f71;p=jalview.git

diff --git a/src/jalview/ws/slivkaws/SlivkaWSInstance.java b/src/jalview/ws/slivkaws/SlivkaWSInstance.java
index 658d99e..0c71c35 100644
--- a/src/jalview/ws/slivkaws/SlivkaWSInstance.java
+++ b/src/jalview/ws/slivkaws/SlivkaWSInstance.java
@@ -95,8 +95,11 @@ public abstract class SlivkaWSInstance extends ServiceWithParameters
           format = FileFormat.Fasta;
           break;
         }
-        InputStream stream = new ByteArrayInputStream(
-            fa.formatSequences(format, sequences.toArray(new SequenceI[0]))
+        
+        // we avoid any use of Jalview's user facing export routines here
+        
+        InputStream stream = new ByteArrayInputStream(format.getWriter(null)
+                .print(sequences.toArray(new SequenceI[0]), false)
                 .getBytes());
         request.addFile(param.getId(), stream);
       }