X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws2%2Foperations%2FAlignmentOperation.java;fp=src%2Fjalview%2Fws2%2Foperations%2FAlignmentOperation.java;h=89aeb794fb509f8fbf552aca5061883b8f038432;hb=7385bc1418b68162cc670cc35f89033f34db2e86;hp=5b2f554801b78c0386c41a236fa97793c2c22fcb;hpb=743dffc0b47bcc06ea8241ee4e36f1a16ace7cf3;p=jalview.git

diff --git a/src/jalview/ws2/operations/AlignmentOperation.java b/src/jalview/ws2/operations/AlignmentOperation.java
index 5b2f554..89aeb79 100644
--- a/src/jalview/ws2/operations/AlignmentOperation.java
+++ b/src/jalview/ws2/operations/AlignmentOperation.java
@@ -110,6 +110,12 @@ public class AlignmentOperation implements Operation
   {
     return true;
   }
+  
+  @Override
+  public boolean isAlignmentAnalysis()
+  {
+    return false;
+  }
 
   @Override
   public boolean canSubmitGaps()
@@ -123,6 +129,18 @@ public class AlignmentOperation implements Operation
   {
     return false;
   }
+  
+  @Override
+  public boolean getFilterNonStandardSymbols()
+  {
+    return true;
+  }
+  
+  @Override
+  public boolean getNeedsAlignedSequences()
+  {
+    return false;
+  }
 
   @Override
   public MenuEntryProviderI getMenuBuilder()