X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FJalviewUserColours.java;fp=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FJalviewUserColours.java;h=be6826629f6b57af81420edcf3d43dfbf7c24eb5;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=e1ee27ef4f71857f4629220b9a12c828865bdb54;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git

diff --git a/src/jalview/xml/binding/jalview/JalviewUserColours.java b/src/jalview/xml/binding/jalview/JalviewUserColours.java
index e1ee27e..be68266 100644
--- a/src/jalview/xml/binding/jalview/JalviewUserColours.java
+++ b/src/jalview/xml/binding/jalview/JalviewUserColours.java
@@ -5,7 +5,6 @@
 // Generated on: 2021.08.30 at 11:05:22 AM BST 
 //
 
-
 package jalview.xml.binding.jalview;
 
 import java.util.ArrayList;
@@ -16,597 +15,585 @@ import javax.xml.bind.annotation.XmlAttribute;
 import javax.xml.bind.annotation.XmlElement;
 import javax.xml.bind.annotation.XmlType;
 
-
 /**
  * <p>Java class for JalviewUserColours complex type.
  * 
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content
+ * contained within this class.
  * 
- * <pre>
- * <complexType name="JalviewUserColours">
- *   <complexContent>
- *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *       <sequence>
- *         <element name="Version" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- *         <element name="colour" maxOccurs="unbounded" minOccurs="0">
- *           <complexType>
- *             <complexContent>
- *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *                 <sequence>
- *                   <element name="attributeName" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2" minOccurs="0"/>
- *                 </sequence>
- *                 <attribute name="Name" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 <attribute name="RGB" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 <attribute name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 <attribute name="noValueColour" type="{www.jalview.org/colours}NoValueColour" default="Min" />
- *                 <attribute name="threshType" type="{www.jalview.org/colours}ThresholdType" />
- *                 <attribute name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" />
- *                 <attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float" />
- *                 <attribute name="min" type="{http://www.w3.org/2001/XMLSchema}float" />
- *                 <attribute name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- *                 <attribute name="autoScale" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- *               </restriction>
- *             </complexContent>
- *           </complexType>
- *         </element>
- *         <element name="filter" maxOccurs="unbounded" minOccurs="0">
- *           <complexType>
- *             <complexContent>
- *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *                 <sequence>
- *                   <element name="matcherSet" type="{www.jalview.org/colours}FeatureMatcherSet"/>
- *                 </sequence>
- *                 <attribute name="featureType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- *               </restriction>
- *             </complexContent>
- *           </complexType>
- *         </element>
- *       </sequence>
- *       <attribute name="schemeName" type="{http://www.w3.org/2001/XMLSchema}string" />
- *     </restriction>
- *   </complexContent>
- * </complexType>
- * </pre>
+ * <pre> <complexType name="JalviewUserColours">
+ * <complexContent> <restriction
+ * base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence> <element name="Version"
+ * type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="colour" maxOccurs="unbounded" minOccurs="0">
+ * <complexType> <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence> <element name="attributeName"
+ * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2"
+ * minOccurs="0"/> </sequence> <attribute
+ * name="Name" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="RGB" use="required"
+ * type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute
+ * name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="noValueColour"
+ * type="{www.jalview.org/colours}NoValueColour" default="Min" />
+ * <attribute name="threshType"
+ * type="{www.jalview.org/colours}ThresholdType" /> <attribute
+ * name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float"
+ * /> <attribute name="min"
+ * type="{http://www.w3.org/2001/XMLSchema}float" /> <attribute
+ * name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean"
+ * /> <attribute name="autoScale"
+ * type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ * </restriction> </complexContent>
+ * </complexType> </element> <element
+ * name="filter" maxOccurs="unbounded" minOccurs="0">
+ * <complexType> <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence> <element name="matcherSet"
+ * type="{www.jalview.org/colours}FeatureMatcherSet"/>
+ * </sequence> <attribute name="featureType" use="required"
+ * type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction> </complexContent>
+ * </complexType> </element>
+ * </sequence> <attribute name="schemeName"
+ * type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction> </complexContent>
+ * </complexType> </pre>
  * 
  * 
  */
 @XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "JalviewUserColours", namespace = "www.jalview.org/colours", propOrder = {
-    "version",
-    "colour",
-    "filter"
-})
-public class JalviewUserColours {
-
-    @XmlElement(name = "Version", namespace = "")
-    protected String version;
-    @XmlElement(namespace = "")
-    protected List<JalviewUserColours.Colour> colour;
+@XmlType(
+  name = "JalviewUserColours",
+  namespace = "www.jalview.org/colours",
+  propOrder =
+  { "version", "colour", "filter" })
+public class JalviewUserColours
+{
+
+  @XmlElement(name = "Version", namespace = "")
+  protected String version;
+
+  @XmlElement(namespace = "")
+  protected List<JalviewUserColours.Colour> colour;
+
+  @XmlElement(namespace = "")
+  protected List<JalviewUserColours.Filter> filter;
+
+  @XmlAttribute(name = "schemeName")
+  protected String schemeName;
+
+  /**
+   * Gets the value of the version property.
+   * 
+   * @return possible object is {@link String }
+   * 
+   */
+  public String getVersion()
+  {
+    return version;
+  }
+
+  /**
+   * Sets the value of the version property.
+   * 
+   * @param value
+   *          allowed object is {@link String }
+   * 
+   */
+  public void setVersion(String value)
+  {
+    this.version = value;
+  }
+
+  /**
+   * Gets the value of the colour property.
+   * 
+   * &lt;p&gt; This accessor method returns a reference to the live list, not a
+   * snapshot. Therefore any modification you make to the returned list will be
+   * present inside the JAXB object. This is why there is not a
+   * &lt;CODE&gt;set&lt;/CODE&gt; method for the colour property.
+   * 
+   * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
+   * getColour().add(newItem); &lt;/pre&gt;
+   * 
+   * 
+   * &lt;p&gt; Objects of the following type(s) are allowed in the list
+   * {@link JalviewUserColours.Colour }
+   * 
+   * 
+   */
+  public List<JalviewUserColours.Colour> getColour()
+  {
+    if (colour == null)
+    {
+      colour = new ArrayList<JalviewUserColours.Colour>();
+    }
+    return this.colour;
+  }
+
+  /**
+   * Gets the value of the filter property.
+   * 
+   * &lt;p&gt; This accessor method returns a reference to the live list, not a
+   * snapshot. Therefore any modification you make to the returned list will be
+   * present inside the JAXB object. This is why there is not a
+   * &lt;CODE&gt;set&lt;/CODE&gt; method for the filter property.
+   * 
+   * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
+   * getFilter().add(newItem); &lt;/pre&gt;
+   * 
+   * 
+   * &lt;p&gt; Objects of the following type(s) are allowed in the list
+   * {@link JalviewUserColours.Filter }
+   * 
+   * 
+   */
+  public List<JalviewUserColours.Filter> getFilter()
+  {
+    if (filter == null)
+    {
+      filter = new ArrayList<JalviewUserColours.Filter>();
+    }
+    return this.filter;
+  }
+
+  /**
+   * Gets the value of the schemeName property.
+   * 
+   * @return possible object is {@link String }
+   * 
+   */
+  public String getSchemeName()
+  {
+    return schemeName;
+  }
+
+  /**
+   * Sets the value of the schemeName property.
+   * 
+   * @param value
+   *          allowed object is {@link String }
+   * 
+   */
+  public void setSchemeName(String value)
+  {
+    this.schemeName = value;
+  }
+
+  /**
+   * &lt;p&gt;Java class for anonymous complex type.
+   * 
+   * &lt;p&gt;The following schema fragment specifies the expected content
+   * contained within this class.
+   * 
+   * &lt;pre&gt; &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
+   * &amp;lt;restriction
+   * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+   * &amp;lt;sequence&amp;gt; &amp;lt;element name="attributeName"
+   * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2"
+   * minOccurs="0"/&amp;gt; &amp;lt;/sequence&amp;gt; &amp;lt;attribute
+   * name="Name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+   * &amp;lt;attribute name="RGB" use="required"
+   * type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt; &amp;lt;attribute
+   * name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+   * &amp;lt;attribute name="noValueColour"
+   * type="{www.jalview.org/colours}NoValueColour" default="Min" /&amp;gt;
+   * &amp;lt;attribute name="threshType"
+   * type="{www.jalview.org/colours}ThresholdType" /&amp;gt; &amp;lt;attribute
+   * name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
+   * &amp;lt;attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float"
+   * /&amp;gt; &amp;lt;attribute name="min"
+   * type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt; &amp;lt;attribute
+   * name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean"
+   * /&amp;gt; &amp;lt;attribute name="autoScale"
+   * type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
+   * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
+   * &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
+   * 
+   * 
+   */
+  @XmlAccessorType(XmlAccessType.FIELD)
+  @XmlType(name = "", propOrder = { "attributeName" })
+  public static class Colour
+  {
+
     @XmlElement(namespace = "")
-    protected List<JalviewUserColours.Filter> filter;
-    @XmlAttribute(name = "schemeName")
-    protected String schemeName;
+    protected List<String> attributeName;
+
+    @XmlAttribute(name = "Name")
+    protected String name;
+
+    @XmlAttribute(name = "RGB", required = true)
+    protected String rgb;
+
+    @XmlAttribute(name = "minRGB")
+    protected String minRGB;
+
+    @XmlAttribute(name = "noValueColour")
+    protected NoValueColour noValueColour;
+
+    @XmlAttribute(name = "threshType")
+    protected ThresholdType threshType;
+
+    @XmlAttribute(name = "threshold")
+    protected Float threshold;
+
+    @XmlAttribute(name = "max")
+    protected Float max;
+
+    @XmlAttribute(name = "min")
+    protected Float min;
+
+    @XmlAttribute(name = "colourByLabel")
+    protected Boolean colourByLabel;
+
+    @XmlAttribute(name = "autoScale")
+    protected Boolean autoScale;
+
+    /**
+     * Gets the value of the attributeName property.
+     * 
+     * &lt;p&gt; This accessor method returns a reference to the live list, not
+     * a snapshot. Therefore any modification you make to the returned list will
+     * be present inside the JAXB object. This is why there is not a
+     * &lt;CODE&gt;set&lt;/CODE&gt; method for the attributeName property.
+     * 
+     * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
+     * getAttributeName().add(newItem); &lt;/pre&gt;
+     * 
+     * 
+     * &lt;p&gt; Objects of the following type(s) are allowed in the list
+     * {@link String }
+     * 
+     * 
+     */
+    public List<String> getAttributeName()
+    {
+      if (attributeName == null)
+      {
+        attributeName = new ArrayList<String>();
+      }
+      return this.attributeName;
+    }
+
+    /**
+     * Gets the value of the name property.
+     * 
+     * @return possible object is {@link String }
+     * 
+     */
+    public String getName()
+    {
+      return name;
+    }
+
+    /**
+     * Sets the value of the name property.
+     * 
+     * @param value
+     *          allowed object is {@link String }
+     * 
+     */
+    public void setName(String value)
+    {
+      this.name = value;
+    }
+
+    /**
+     * Gets the value of the rgb property.
+     * 
+     * @return possible object is {@link String }
+     * 
+     */
+    public String getRGB()
+    {
+      return rgb;
+    }
+
+    /**
+     * Sets the value of the rgb property.
+     * 
+     * @param value
+     *          allowed object is {@link String }
+     * 
+     */
+    public void setRGB(String value)
+    {
+      this.rgb = value;
+    }
+
+    /**
+     * Gets the value of the minRGB property.
+     * 
+     * @return possible object is {@link String }
+     * 
+     */
+    public String getMinRGB()
+    {
+      return minRGB;
+    }
+
+    /**
+     * Sets the value of the minRGB property.
+     * 
+     * @param value
+     *          allowed object is {@link String }
+     * 
+     */
+    public void setMinRGB(String value)
+    {
+      this.minRGB = value;
+    }
 
     /**
-     * Gets the value of the version property.
+     * Gets the value of the noValueColour property.
+     * 
+     * @return possible object is {@link NoValueColour }
      * 
-     * @return
-     *     possible object is
-     *     {@link String }
-     *     
      */
-    public String getVersion() {
-        return version;
+    public NoValueColour getNoValueColour()
+    {
+      if (noValueColour == null)
+      {
+        return NoValueColour.MIN;
+      }
+      else
+      {
+        return noValueColour;
+      }
     }
 
     /**
-     * Sets the value of the version property.
+     * Sets the value of the noValueColour property.
      * 
      * @param value
-     *     allowed object is
-     *     {@link String }
-     *     
+     *          allowed object is {@link NoValueColour }
+     * 
      */
-    public void setVersion(String value) {
-        this.version = value;
+    public void setNoValueColour(NoValueColour value)
+    {
+      this.noValueColour = value;
     }
 
     /**
-     * Gets the value of the colour property.
+     * Gets the value of the threshType property.
      * 
-     * &lt;p&gt;
-     * This accessor method returns a reference to the live list,
-     * not a snapshot. Therefore any modification you make to the
-     * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the colour property.
+     * @return possible object is {@link ThresholdType }
      * 
-     * &lt;p&gt;
-     * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
-     *    getColour().add(newItem);
-     * &lt;/pre&gt;
+     */
+    public ThresholdType getThreshType()
+    {
+      return threshType;
+    }
+
+    /**
+     * Sets the value of the threshType property.
      * 
+     * @param value
+     *          allowed object is {@link ThresholdType }
      * 
-     * &lt;p&gt;
-     * Objects of the following type(s) are allowed in the list
-     * {@link JalviewUserColours.Colour }
+     */
+    public void setThreshType(ThresholdType value)
+    {
+      this.threshType = value;
+    }
+
+    /**
+     * Gets the value of the threshold property.
      * 
+     * @return possible object is {@link Float }
      * 
      */
-    public List<JalviewUserColours.Colour> getColour() {
-        if (colour == null) {
-            colour = new ArrayList<JalviewUserColours.Colour>();
-        }
-        return this.colour;
+    public Float getThreshold()
+    {
+      return threshold;
     }
 
     /**
-     * Gets the value of the filter property.
+     * Sets the value of the threshold property.
      * 
-     * &lt;p&gt;
-     * This accessor method returns a reference to the live list,
-     * not a snapshot. Therefore any modification you make to the
-     * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the filter property.
+     * @param value
+     *          allowed object is {@link Float }
      * 
-     * &lt;p&gt;
-     * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
-     *    getFilter().add(newItem);
-     * &lt;/pre&gt;
+     */
+    public void setThreshold(Float value)
+    {
+      this.threshold = value;
+    }
+
+    /**
+     * Gets the value of the max property.
      * 
+     * @return possible object is {@link Float }
      * 
-     * &lt;p&gt;
-     * Objects of the following type(s) are allowed in the list
-     * {@link JalviewUserColours.Filter }
+     */
+    public Float getMax()
+    {
+      return max;
+    }
+
+    /**
+     * Sets the value of the max property.
      * 
+     * @param value
+     *          allowed object is {@link Float }
      * 
      */
-    public List<JalviewUserColours.Filter> getFilter() {
-        if (filter == null) {
-            filter = new ArrayList<JalviewUserColours.Filter>();
-        }
-        return this.filter;
+    public void setMax(Float value)
+    {
+      this.max = value;
     }
 
     /**
-     * Gets the value of the schemeName property.
+     * Gets the value of the min property.
+     * 
+     * @return possible object is {@link Float }
      * 
-     * @return
-     *     possible object is
-     *     {@link String }
-     *     
      */
-    public String getSchemeName() {
-        return schemeName;
+    public Float getMin()
+    {
+      return min;
     }
 
     /**
-     * Sets the value of the schemeName property.
+     * Sets the value of the min property.
      * 
      * @param value
-     *     allowed object is
-     *     {@link String }
-     *     
+     *          allowed object is {@link Float }
+     * 
+     */
+    public void setMin(Float value)
+    {
+      this.min = value;
+    }
+
+    /**
+     * Gets the value of the colourByLabel property.
+     * 
+     * @return possible object is {@link Boolean }
+     * 
      */
-    public void setSchemeName(String value) {
-        this.schemeName = value;
+    public Boolean isColourByLabel()
+    {
+      return colourByLabel;
     }
 
+    /**
+     * Sets the value of the colourByLabel property.
+     * 
+     * @param value
+     *          allowed object is {@link Boolean }
+     * 
+     */
+    public void setColourByLabel(Boolean value)
+    {
+      this.colourByLabel = value;
+    }
 
     /**
-     * &lt;p&gt;Java class for anonymous complex type.
-     * 
-     * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
-     * 
-     * &lt;pre&gt;
-     * &amp;lt;complexType&amp;gt;
-     *   &amp;lt;complexContent&amp;gt;
-     *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
-     *       &amp;lt;sequence&amp;gt;
-     *         &amp;lt;element name="attributeName" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2" minOccurs="0"/&amp;gt;
-     *       &amp;lt;/sequence&amp;gt;
-     *       &amp;lt;attribute name="Name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-     *       &amp;lt;attribute name="RGB" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-     *       &amp;lt;attribute name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-     *       &amp;lt;attribute name="noValueColour" type="{www.jalview.org/colours}NoValueColour" default="Min" /&amp;gt;
-     *       &amp;lt;attribute name="threshType" type="{www.jalview.org/colours}ThresholdType" /&amp;gt;
-     *       &amp;lt;attribute name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
-     *       &amp;lt;attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
-     *       &amp;lt;attribute name="min" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
-     *       &amp;lt;attribute name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
-     *       &amp;lt;attribute name="autoScale" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
-     *     &amp;lt;/restriction&amp;gt;
-     *   &amp;lt;/complexContent&amp;gt;
-     * &amp;lt;/complexType&amp;gt;
-     * &lt;/pre&gt;
+     * Gets the value of the autoScale property.
      * 
+     * @return possible object is {@link Boolean }
      * 
      */
-    @XmlAccessorType(XmlAccessType.FIELD)
-    @XmlType(name = "", propOrder = {
-        "attributeName"
-    })
-    public static class Colour {
-
-        @XmlElement(namespace = "")
-        protected List<String> attributeName;
-        @XmlAttribute(name = "Name")
-        protected String name;
-        @XmlAttribute(name = "RGB", required = true)
-        protected String rgb;
-        @XmlAttribute(name = "minRGB")
-        protected String minRGB;
-        @XmlAttribute(name = "noValueColour")
-        protected NoValueColour noValueColour;
-        @XmlAttribute(name = "threshType")
-        protected ThresholdType threshType;
-        @XmlAttribute(name = "threshold")
-        protected Float threshold;
-        @XmlAttribute(name = "max")
-        protected Float max;
-        @XmlAttribute(name = "min")
-        protected Float min;
-        @XmlAttribute(name = "colourByLabel")
-        protected Boolean colourByLabel;
-        @XmlAttribute(name = "autoScale")
-        protected Boolean autoScale;
-
-        /**
-         * Gets the value of the attributeName property.
-         * 
-         * &lt;p&gt;
-         * This accessor method returns a reference to the live list,
-         * not a snapshot. Therefore any modification you make to the
-         * returned list will be present inside the JAXB object.
-         * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the attributeName property.
-         * 
-         * &lt;p&gt;
-         * For example, to add a new item, do as follows:
-         * &lt;pre&gt;
-         *    getAttributeName().add(newItem);
-         * &lt;/pre&gt;
-         * 
-         * 
-         * &lt;p&gt;
-         * Objects of the following type(s) are allowed in the list
-         * {@link String }
-         * 
-         * 
-         */
-        public List<String> getAttributeName() {
-            if (attributeName == null) {
-                attributeName = new ArrayList<String>();
-            }
-            return this.attributeName;
-        }
-
-        /**
-         * Gets the value of the name property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link String }
-         *     
-         */
-        public String getName() {
-            return name;
-        }
-
-        /**
-         * Sets the value of the name property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link String }
-         *     
-         */
-        public void setName(String value) {
-            this.name = value;
-        }
-
-        /**
-         * Gets the value of the rgb property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link String }
-         *     
-         */
-        public String getRGB() {
-            return rgb;
-        }
-
-        /**
-         * Sets the value of the rgb property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link String }
-         *     
-         */
-        public void setRGB(String value) {
-            this.rgb = value;
-        }
-
-        /**
-         * Gets the value of the minRGB property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link String }
-         *     
-         */
-        public String getMinRGB() {
-            return minRGB;
-        }
-
-        /**
-         * Sets the value of the minRGB property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link String }
-         *     
-         */
-        public void setMinRGB(String value) {
-            this.minRGB = value;
-        }
-
-        /**
-         * Gets the value of the noValueColour property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link NoValueColour }
-         *     
-         */
-        public NoValueColour getNoValueColour() {
-            if (noValueColour == null) {
-                return NoValueColour.MIN;
-            } else {
-                return noValueColour;
-            }
-        }
-
-        /**
-         * Sets the value of the noValueColour property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link NoValueColour }
-         *     
-         */
-        public void setNoValueColour(NoValueColour value) {
-            this.noValueColour = value;
-        }
-
-        /**
-         * Gets the value of the threshType property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link ThresholdType }
-         *     
-         */
-        public ThresholdType getThreshType() {
-            return threshType;
-        }
-
-        /**
-         * Sets the value of the threshType property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link ThresholdType }
-         *     
-         */
-        public void setThreshType(ThresholdType value) {
-            this.threshType = value;
-        }
-
-        /**
-         * Gets the value of the threshold property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link Float }
-         *     
-         */
-        public Float getThreshold() {
-            return threshold;
-        }
-
-        /**
-         * Sets the value of the threshold property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link Float }
-         *     
-         */
-        public void setThreshold(Float value) {
-            this.threshold = value;
-        }
-
-        /**
-         * Gets the value of the max property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link Float }
-         *     
-         */
-        public Float getMax() {
-            return max;
-        }
-
-        /**
-         * Sets the value of the max property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link Float }
-         *     
-         */
-        public void setMax(Float value) {
-            this.max = value;
-        }
-
-        /**
-         * Gets the value of the min property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link Float }
-         *     
-         */
-        public Float getMin() {
-            return min;
-        }
-
-        /**
-         * Sets the value of the min property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link Float }
-         *     
-         */
-        public void setMin(Float value) {
-            this.min = value;
-        }
-
-        /**
-         * Gets the value of the colourByLabel property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link Boolean }
-         *     
-         */
-        public Boolean isColourByLabel() {
-            return colourByLabel;
-        }
-
-        /**
-         * Sets the value of the colourByLabel property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link Boolean }
-         *     
-         */
-        public void setColourByLabel(Boolean value) {
-            this.colourByLabel = value;
-        }
-
-        /**
-         * Gets the value of the autoScale property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link Boolean }
-         *     
-         */
-        public Boolean isAutoScale() {
-            return autoScale;
-        }
-
-        /**
-         * Sets the value of the autoScale property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link Boolean }
-         *     
-         */
-        public void setAutoScale(Boolean value) {
-            this.autoScale = value;
-        }
+    public Boolean isAutoScale()
+    {
+      return autoScale;
+    }
 
+    /**
+     * Sets the value of the autoScale property.
+     * 
+     * @param value
+     *          allowed object is {@link Boolean }
+     * 
+     */
+    public void setAutoScale(Boolean value)
+    {
+      this.autoScale = value;
     }
 
+  }
+
+  /**
+   * &lt;p&gt;Java class for anonymous complex type.
+   * 
+   * &lt;p&gt;The following schema fragment specifies the expected content
+   * contained within this class.
+   * 
+   * &lt;pre&gt; &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
+   * &amp;lt;restriction
+   * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+   * &amp;lt;sequence&amp;gt; &amp;lt;element name="matcherSet"
+   * type="{www.jalview.org/colours}FeatureMatcherSet"/&amp;gt;
+   * &amp;lt;/sequence&amp;gt; &amp;lt;attribute name="featureType"
+   * use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+   * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
+   * &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
+   * 
+   * 
+   */
+  @XmlAccessorType(XmlAccessType.FIELD)
+  @XmlType(name = "", propOrder = { "matcherSet" })
+  public static class Filter
+  {
+
+    @XmlElement(namespace = "", required = true)
+    protected FeatureMatcherSet matcherSet;
+
+    @XmlAttribute(name = "featureType", required = true)
+    protected String featureType;
 
     /**
-     * &lt;p&gt;Java class for anonymous complex type.
+     * Gets the value of the matcherSet property.
      * 
-     * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
+     * @return possible object is {@link FeatureMatcherSet }
      * 
-     * &lt;pre&gt;
-     * &amp;lt;complexType&amp;gt;
-     *   &amp;lt;complexContent&amp;gt;
-     *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
-     *       &amp;lt;sequence&amp;gt;
-     *         &amp;lt;element name="matcherSet" type="{www.jalview.org/colours}FeatureMatcherSet"/&amp;gt;
-     *       &amp;lt;/sequence&amp;gt;
-     *       &amp;lt;attribute name="featureType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-     *     &amp;lt;/restriction&amp;gt;
-     *   &amp;lt;/complexContent&amp;gt;
-     * &amp;lt;/complexType&amp;gt;
-     * &lt;/pre&gt;
+     */
+    public FeatureMatcherSet getMatcherSet()
+    {
+      return matcherSet;
+    }
+
+    /**
+     * Sets the value of the matcherSet property.
      * 
+     * @param value
+     *          allowed object is {@link FeatureMatcherSet }
      * 
      */
-    @XmlAccessorType(XmlAccessType.FIELD)
-    @XmlType(name = "", propOrder = {
-        "matcherSet"
-    })
-    public static class Filter {
-
-        @XmlElement(namespace = "", required = true)
-        protected FeatureMatcherSet matcherSet;
-        @XmlAttribute(name = "featureType", required = true)
-        protected String featureType;
-
-        /**
-         * Gets the value of the matcherSet property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link FeatureMatcherSet }
-         *     
-         */
-        public FeatureMatcherSet getMatcherSet() {
-            return matcherSet;
-        }
-
-        /**
-         * Sets the value of the matcherSet property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link FeatureMatcherSet }
-         *     
-         */
-        public void setMatcherSet(FeatureMatcherSet value) {
-            this.matcherSet = value;
-        }
-
-        /**
-         * Gets the value of the featureType property.
-         * 
-         * @return
-         *     possible object is
-         *     {@link String }
-         *     
-         */
-        public String getFeatureType() {
-            return featureType;
-        }
-
-        /**
-         * Sets the value of the featureType property.
-         * 
-         * @param value
-         *     allowed object is
-         *     {@link String }
-         *     
-         */
-        public void setFeatureType(String value) {
-            this.featureType = value;
-        }
+    public void setMatcherSet(FeatureMatcherSet value)
+    {
+      this.matcherSet = value;
+    }
 
+    /**
+     * Gets the value of the featureType property.
+     * 
+     * @return possible object is {@link String }
+     * 
+     */
+    public String getFeatureType()
+    {
+      return featureType;
     }
 
+    /**
+     * Sets the value of the featureType property.
+     * 
+     * @param value
+     *          allowed object is {@link String }
+     * 
+     */
+    public void setFeatureType(String value)
+    {
+      this.featureType = value;
+    }
+
+  }
+
 }