X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequenceSet.java;h=ce80b9c8586faaca5f583546c74118b9a37e6611;hb=c1d8867e99833bcb9019aaebddfabb99dd852f66;hp=78df533bdd60482484382b6dfb84423a13a192b4;hpb=1730be35c0c3fda8f9c63f1fb6dcea7b5fb2ba35;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/SequenceSet.java b/src/jalview/xml/binding/jalview/SequenceSet.java index 78df533..ce80b9c 100644 --- a/src/jalview/xml/binding/jalview/SequenceSet.java +++ b/src/jalview/xml/binding/jalview/SequenceSet.java @@ -1,8 +1,8 @@ // -// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 -// See http://java.sun.com/xml/jaxb +// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 +// See https://eclipse-ee4j.github.io/jaxb-ri // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2023.08.28 at 01:52:46 PM BST +// Generated on: 2023.09.01 at 02:16:11 PM BST // @@ -19,36 +19,36 @@ import javax.xml.bind.annotation.XmlType; /** - *

Java class for anonymous complex type. + * <p>Java class for anonymous complex type. * - *

The following schema fragment specifies the expected content contained within this class. + * <p>The following schema fragment specifies the expected content contained within this class. * - * 

- * <complexType>
- *   <complexContent>
- *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *       <sequence>
- *         <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/>
- *         <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/>
- *         <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0">
- *           <complexType>
- *             <complexContent>
- *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *                 <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
- *               </restriction>
- *             </complexContent>
- *           </complexType>
- *         </element>
- *         <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/>
- *         <element name="Matrices" type="{www.vamsas.ac.uk/jalview/version2}MatrixType" maxOccurs="unbounded" minOccurs="0"/>
- *       </sequence>
- *       <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" />
- *     </restriction>
- *   </complexContent>
- * </complexType>
- *
+ * <pre> + * &lt;complexType&gt; + * &lt;complexContent&gt; + * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; + * &lt;sequence&gt; + * &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/&gt; + * &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/&gt; + * &lt;element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0"&gt; + * &lt;complexType&gt; + * &lt;complexContent&gt; + * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; + * &lt;attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;/restriction&gt; + * &lt;/complexContent&gt; + * &lt;/complexType&gt; + * &lt;/element&gt; + * &lt;element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/&gt; + * &lt;element name="Matrix" type="{www.vamsas.ac.uk/jalview/version2}MatrixType" maxOccurs="unbounded" minOccurs="0"/&gt; + * &lt;/sequence&gt; + * &lt;attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;/restriction&gt; + * &lt;/complexContent&gt; + * &lt;/complexType&gt; + * </pre> * * */ @@ -58,7 +58,7 @@ import javax.xml.bind.annotation.XmlType; "annotation", "sequenceSetProperties", "alcodonFrame", - "matrices" + "matrix" }) @XmlRootElement(name = "SequenceSet") public class SequenceSet { @@ -70,8 +70,8 @@ public class SequenceSet { protected List sequenceSetProperties; @XmlElement(name = "AlcodonFrame") protected List alcodonFrame; - @XmlElement(name = "Matrices") - protected List matrices; + @XmlElement(name = "Matrix") + protected List matrix; @XmlAttribute(name = "gapChar", required = true) protected String gapChar; @XmlAttribute(name = "datasetId") @@ -80,20 +80,20 @@ public class SequenceSet { /** * Gets the value of the sequence property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the sequence property. + * This is why there is not a <CODE>set</CODE> method for the sequence property. * - *

+ * <p> * For example, to add a new item, do as follows: - * 

+     * <pre>
      *    getSequence().add(newItem);
-     *
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link Sequence } * @@ -109,20 +109,20 @@ public class SequenceSet { /** * Gets the value of the annotation property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the annotation property. + * This is why there is not a <CODE>set</CODE> method for the annotation property. * - *

+ * <p> * For example, to add a new item, do as follows: - * 

+     * <pre>
      *    getAnnotation().add(newItem);
-     *
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link Annotation } * @@ -138,20 +138,20 @@ public class SequenceSet { /** * Gets the value of the sequenceSetProperties property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the sequenceSetProperties property. + * This is why there is not a <CODE>set</CODE> method for the sequenceSetProperties property. * - *

+ * <p> * For example, to add a new item, do as follows: - * 

+     * <pre>
      *    getSequenceSetProperties().add(newItem);
-     *
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link SequenceSet.SequenceSetProperties } * @@ -167,20 +167,20 @@ public class SequenceSet { /** * Gets the value of the alcodonFrame property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the alcodonFrame property. + * This is why there is not a <CODE>set</CODE> method for the alcodonFrame property. * - *

+ * <p> * For example, to add a new item, do as follows: - * 

+     * <pre>
      *    getAlcodonFrame().add(newItem);
-     *
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link AlcodonFrame } * @@ -194,32 +194,32 @@ public class SequenceSet { } /** - * Gets the value of the matrices property. + * Gets the value of the matrix property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the matrices property. + * This is why there is not a <CODE>set</CODE> method for the matrix property. * - *

+ * <p> * For example, to add a new item, do as follows: - * 

-     *    getMatrices().add(newItem);
-     *
+ * <pre> + * getMatrix().add(newItem); + * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link MatrixType } * * */ - public List getMatrices() { - if (matrices == null) { - matrices = new ArrayList(); + public List getMatrix() { + if (matrix == null) { + matrix = new ArrayList(); } - return this.matrices; + return this.matrix; } /** @@ -272,20 +272,20 @@ public class SequenceSet { /** - *

Java class for anonymous complex type. - * - *

The following schema fragment specifies the expected content contained within this class. - * - * 

-     * <complexType>
-     *   <complexContent>
-     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-     *       <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *     </restriction>
-     *   </complexContent>
-     * </complexType>
-     *
+ * <p>Java class for anonymous complex type. + * + * <p>The following schema fragment specifies the expected content contained within this class. + * + * <pre> + * &lt;complexType&gt; + * &lt;complexContent&gt; + * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; + * &lt;attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;/restriction&gt; + * &lt;/complexContent&gt; + * &lt;/complexType&gt; + * </pre> * * */