X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FGeneLocationType.java;fp=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FGeneLocationType.java;h=5a2ebcf81e2e24627fb302444ad08cfea632425f;hb=4d64932654de3f6ffe07db11d18f2d21f558c6e6;hp=0000000000000000000000000000000000000000;hpb=382f5ff058a4c2fed1e9874bb712b40f16ec1a4e;p=jalview.git diff --git a/src/jalview/xml/binding/uniprot/GeneLocationType.java b/src/jalview/xml/binding/uniprot/GeneLocationType.java new file mode 100644 index 0000000..5a2ebcf --- /dev/null +++ b/src/jalview/xml/binding/uniprot/GeneLocationType.java @@ -0,0 +1,152 @@ +// +// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 +// See http://java.sun.com/xml/jaxb +// Any modifications to this file will be lost upon recompilation of the source schema. +// Generated on: 2018.09.13 at 10:18:53 AM BST +// + + +package jalview.xml.binding.uniprot; + +import java.util.ArrayList; +import java.util.List; +import javax.xml.bind.annotation.XmlAccessType; +import javax.xml.bind.annotation.XmlAccessorType; +import javax.xml.bind.annotation.XmlAttribute; +import javax.xml.bind.annotation.XmlType; + + +/** + * Describes non-nuclear gene locations (organelles and plasmids). + * Equivalent to the flat file OG-line. + * + *

Java class for geneLocationType complex type. + * + *

The following schema fragment specifies the expected content contained within this class. + * + *

+ * <complexType name="geneLocationType">
+ *   <complexContent>
+ *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       <sequence>
+ *         <element name="name" type="{http://uniprot.org/uniprot}statusType" maxOccurs="unbounded" minOccurs="0"/>
+ *       </sequence>
+ *       <attribute name="type" use="required">
+ *         <simpleType>
+ *           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ *             <enumeration value="apicoplast"/>
+ *             <enumeration value="chloroplast"/>
+ *             <enumeration value="organellar chromatophore"/>
+ *             <enumeration value="cyanelle"/>
+ *             <enumeration value="hydrogenosome"/>
+ *             <enumeration value="mitochondrion"/>
+ *             <enumeration value="non-photosynthetic plastid"/>
+ *             <enumeration value="nucleomorph"/>
+ *             <enumeration value="plasmid"/>
+ *             <enumeration value="plastid"/>
+ *           </restriction>
+ *         </simpleType>
+ *       </attribute>
+ *       <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ *     </restriction>
+ *   </complexContent>
+ * </complexType>
+ * 
+ * + * + */ +@XmlAccessorType(XmlAccessType.FIELD) +@XmlType(name = "geneLocationType", propOrder = { + "name" +}) +public class GeneLocationType { + + protected List name; + @XmlAttribute(name = "type", required = true) + protected String type; + @XmlAttribute(name = "evidence") + protected List evidence; + + /** + * Gets the value of the name property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the name property. + * + *

+ * For example, to add a new item, do as follows: + *

+     *    getName().add(newItem);
+     * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link StatusType } + * + * + */ + public List getName() { + if (name == null) { + name = new ArrayList(); + } + return this.name; + } + + /** + * Gets the value of the type property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getType() { + return type; + } + + /** + * Sets the value of the type property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setType(String value) { + this.type = value; + } + + /** + * Gets the value of the evidence property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the evidence property. + * + *

+ * For example, to add a new item, do as follows: + *

+     *    getEvidence().add(newItem);
+     * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link Integer } + * + * + */ + public List getEvidence() { + if (evidence == null) { + evidence = new ArrayList(); + } + return this.evidence; + } + +}