X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FOrganismType.java;fp=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FOrganismType.java;h=feabacd18b1471a1ffe66c45ed873d5c13fcca04;hb=4d64932654de3f6ffe07db11d18f2d21f558c6e6;hp=0000000000000000000000000000000000000000;hpb=382f5ff058a4c2fed1e9874bb712b40f16ec1a4e;p=jalview.git

diff --git a/src/jalview/xml/binding/uniprot/OrganismType.java b/src/jalview/xml/binding/uniprot/OrganismType.java
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+//
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
+// Any modifications to this file will be lost upon recompilation of the source schema. 
+// Generated on: 2018.09.13 at 10:18:53 AM BST 
+//
+
+
+package jalview.xml.binding.uniprot;
+
+import java.util.ArrayList;
+import java.util.List;
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlAttribute;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlType;
+
+
+/**
+ * Describes the source organism.
+ * 
+ * <p>Java class for organismType complex type.
+ * 
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ * 
+ * <pre>
+ * &lt;complexType name="organismType">
+ *   &lt;complexContent>
+ *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       &lt;sequence>
+ *         &lt;element name="name" type="{http://uniprot.org/uniprot}organismNameType" maxOccurs="unbounded"/>
+ *         &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded"/>
+ *         &lt;element name="lineage" minOccurs="0">
+ *           &lt;complexType>
+ *             &lt;complexContent>
+ *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *                 &lt;sequence>
+ *                   &lt;element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
+ *                 &lt;/sequence>
+ *               &lt;/restriction>
+ *             &lt;/complexContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *       &lt;/sequence>
+ *       &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ *     &lt;/restriction>
+ *   &lt;/complexContent>
+ * &lt;/complexType>
+ * </pre>
+ * 
+ * 
+ */
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "organismType", propOrder = {
+    "name",
+    "dbReference",
+    "lineage"
+})
+public class OrganismType {
+
+    @XmlElement(required = true)
+    protected List<OrganismNameType> name;
+    @XmlElement(required = true)
+    protected List<DbReferenceType> dbReference;
+    protected OrganismType.Lineage lineage;
+    @XmlAttribute(name = "evidence")
+    protected List<Integer> evidence;
+
+    /**
+     * Gets the value of the name property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the name property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getName().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link OrganismNameType }
+     * 
+     * 
+     */
+    public List<OrganismNameType> getName() {
+        if (name == null) {
+            name = new ArrayList<OrganismNameType>();
+        }
+        return this.name;
+    }
+
+    /**
+     * Gets the value of the dbReference property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the dbReference property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getDbReference().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link DbReferenceType }
+     * 
+     * 
+     */
+    public List<DbReferenceType> getDbReference() {
+        if (dbReference == null) {
+            dbReference = new ArrayList<DbReferenceType>();
+        }
+        return this.dbReference;
+    }
+
+    /**
+     * Gets the value of the lineage property.
+     * 
+     * @return
+     *     possible object is
+     *     {@link OrganismType.Lineage }
+     *     
+     */
+    public OrganismType.Lineage getLineage() {
+        return lineage;
+    }
+
+    /**
+     * Sets the value of the lineage property.
+     * 
+     * @param value
+     *     allowed object is
+     *     {@link OrganismType.Lineage }
+     *     
+     */
+    public void setLineage(OrganismType.Lineage value) {
+        this.lineage = value;
+    }
+
+    /**
+     * Gets the value of the evidence property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the evidence property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getEvidence().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link Integer }
+     * 
+     * 
+     */
+    public List<Integer> getEvidence() {
+        if (evidence == null) {
+            evidence = new ArrayList<Integer>();
+        }
+        return this.evidence;
+    }
+
+
+    /**
+     * <p>Java class for anonymous complex type.
+     * 
+     * <p>The following schema fragment specifies the expected content contained within this class.
+     * 
+     * <pre>
+     * &lt;complexType>
+     *   &lt;complexContent>
+     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       &lt;sequence>
+     *         &lt;element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
+     *       &lt;/sequence>
+     *     &lt;/restriction>
+     *   &lt;/complexContent>
+     * &lt;/complexType>
+     * </pre>
+     * 
+     * 
+     */
+    @XmlAccessorType(XmlAccessType.FIELD)
+    @XmlType(name = "", propOrder = {
+        "taxon"
+    })
+    public static class Lineage {
+
+        @XmlElement(required = true)
+        protected List<String> taxon;
+
+        /**
+         * Gets the value of the taxon property.
+         * 
+         * <p>
+         * This accessor method returns a reference to the live list,
+         * not a snapshot. Therefore any modification you make to the
+         * returned list will be present inside the JAXB object.
+         * This is why there is not a <CODE>set</CODE> method for the taxon property.
+         * 
+         * <p>
+         * For example, to add a new item, do as follows:
+         * <pre>
+         *    getTaxon().add(newItem);
+         * </pre>
+         * 
+         * 
+         * <p>
+         * Objects of the following type(s) are allowed in the list
+         * {@link String }
+         * 
+         * 
+         */
+        public List<String> getTaxon() {
+            if (taxon == null) {
+                taxon = new ArrayList<String>();
+            }
+            return this.taxon;
+        }
+
+    }
+
+}