X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FOrganismType.java;h=033e498fb92992a6153877c6f4e40d7daa93ca14;hb=fdde9a078d7bdb46ed9fb7fe115ea83c84a19c81;hp=bb76add2986731b3688ebf27175a82e64ddcdc08;hpb=5f75f9bff16bce462ef737bacfadd3463366c5c0;p=jalview.git diff --git a/src/jalview/xml/binding/uniprot/OrganismType.java b/src/jalview/xml/binding/uniprot/OrganismType.java index bb76add..033e498 100644 --- a/src/jalview/xml/binding/uniprot/OrganismType.java +++ b/src/jalview/xml/binding/uniprot/OrganismType.java @@ -5,7 +5,6 @@ // Generated on: 2023.03.17 at 05:31:46 PM GMT // - package jalview.xml.binding.uniprot; import java.util.ArrayList; @@ -16,13 +15,15 @@ import javax.xml.bind.annotation.XmlAttribute; import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlType; - /** * Describes the source organism. * - *

Java class for organismType complex type. + *

+ * Java class for organismType complex type. * - *

The following schema fragment specifies the expected content contained within this class. + *

+ * The following schema fragment specifies the expected content contained within + * this class. * *

  * <complexType name="organismType">
@@ -52,190 +53,203 @@ import javax.xml.bind.annotation.XmlType;
  * 
  */
 @XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "organismType", propOrder = {
-    "name",
-    "dbReference",
-    "lineage"
-})
-public class OrganismType {
-
-    @XmlElement(required = true)
-    protected List name;
-    @XmlElement(required = true)
-    protected List dbReference;
-    protected OrganismType.Lineage lineage;
-    @XmlAttribute(name = "evidence")
-    protected List evidence;
-
-    /**
-     * Gets the value of the name property.
-     * 
-     * 

- * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a set method for the name property. - * - *

- * For example, to add a new item, do as follows: - *

-     *    getName().add(newItem);
-     * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link OrganismNameType } - * - * - */ - public List getName() { - if (name == null) { - name = new ArrayList(); - } - return this.name; +@XmlType( + name = "organismType", + propOrder = + { "name", "dbReference", "lineage" }) +public class OrganismType +{ + + @XmlElement(required = true) + protected List name; + + @XmlElement(required = true) + protected List dbReference; + + protected OrganismType.Lineage lineage; + + @XmlAttribute(name = "evidence") + protected List evidence; + + /** + * Gets the value of the name property. + * + *

+ * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a set method + * for the name property. + * + *

+ * For example, to add a new item, do as follows: + * + *

+   * getName().add(newItem);
+   * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link OrganismNameType } + * + * + */ + public List getName() + { + if (name == null) + { + name = new ArrayList(); } - - /** - * Gets the value of the dbReference property. - * - *

- * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a set method for the dbReference property. - * - *

- * For example, to add a new item, do as follows: - *

-     *    getDbReference().add(newItem);
-     * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link DbReferenceType } - * - * - */ - public List getDbReference() { - if (dbReference == null) { - dbReference = new ArrayList(); - } - return this.dbReference; + return this.name; + } + + /** + * Gets the value of the dbReference property. + * + *

+ * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a set method + * for the dbReference property. + * + *

+ * For example, to add a new item, do as follows: + * + *

+   * getDbReference().add(newItem);
+   * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link DbReferenceType } + * + * + */ + public List getDbReference() + { + if (dbReference == null) + { + dbReference = new ArrayList(); } - - /** - * Gets the value of the lineage property. - * - * @return - * possible object is - * {@link OrganismType.Lineage } - * - */ - public OrganismType.Lineage getLineage() { - return lineage; + return this.dbReference; + } + + /** + * Gets the value of the lineage property. + * + * @return possible object is {@link OrganismType.Lineage } + * + */ + public OrganismType.Lineage getLineage() + { + return lineage; + } + + /** + * Sets the value of the lineage property. + * + * @param value + * allowed object is {@link OrganismType.Lineage } + * + */ + public void setLineage(OrganismType.Lineage value) + { + this.lineage = value; + } + + /** + * Gets the value of the evidence property. + * + *

+ * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a set method + * for the evidence property. + * + *

+ * For example, to add a new item, do as follows: + * + *

+   * getEvidence().add(newItem);
+   * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list {@link Integer } + * + * + */ + public List getEvidence() + { + if (evidence == null) + { + evidence = new ArrayList(); } + return this.evidence; + } + + /** + *

+ * Java class for anonymous complex type. + * + *

+ * The following schema fragment specifies the expected content contained + * within this class. + * + *

+   * <complexType>
+   *   <complexContent>
+   *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+   *       <sequence>
+   *         <element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
+   *       </sequence>
+   *     </restriction>
+   *   </complexContent>
+   * </complexType>
+   * 
+ * + * + */ + @XmlAccessorType(XmlAccessType.FIELD) + @XmlType(name = "", propOrder = { "taxon" }) + public static class Lineage + { - /** - * Sets the value of the lineage property. - * - * @param value - * allowed object is - * {@link OrganismType.Lineage } - * - */ - public void setLineage(OrganismType.Lineage value) { - this.lineage = value; - } + @XmlElement(required = true) + protected List taxon; /** - * Gets the value of the evidence property. + * Gets the value of the taxon property. * *

- * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a set method for the evidence property. + * This accessor method returns a reference to the live list, not a + * snapshot. Therefore any modification you make to the returned list will + * be present inside the JAXB object. This is why there is not a + * set method for the taxon property. * *

* For example, to add a new item, do as follows: + * *

-     *    getEvidence().add(newItem);
+     * getTaxon().add(newItem);
      * 
* * *

- * Objects of the following type(s) are allowed in the list - * {@link Integer } + * Objects of the following type(s) are allowed in the list {@link String } * * */ - public List getEvidence() { - if (evidence == null) { - evidence = new ArrayList(); - } - return this.evidence; + public List getTaxon() + { + if (taxon == null) + { + taxon = new ArrayList(); + } + return this.taxon; } - - /** - *

Java class for anonymous complex type. - * - *

The following schema fragment specifies the expected content contained within this class. - * - *

-     * <complexType>
-     *   <complexContent>
-     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-     *       <sequence>
-     *         <element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
-     *       </sequence>
-     *     </restriction>
-     *   </complexContent>
-     * </complexType>
-     * 
- * - * - */ - @XmlAccessorType(XmlAccessType.FIELD) - @XmlType(name = "", propOrder = { - "taxon" - }) - public static class Lineage { - - @XmlElement(required = true) - protected List taxon; - - /** - * Gets the value of the taxon property. - * - *

- * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a set method for the taxon property. - * - *

- * For example, to add a new item, do as follows: - *

-         *    getTaxon().add(newItem);
-         * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link String } - * - * - */ - public List getTaxon() { - if (taxon == null) { - taxon = new ArrayList(); - } - return this.taxon; - } - - } + } }