X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FSourceDataType.java;fp=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FSourceDataType.java;h=03cace38a55e62e0a9e219d817d965565f3eda76;hb=88515cdb74e4603a40c8c1dca14107b5ca503e04;hp=0000000000000000000000000000000000000000;hpb=28c232b27469433dd85d3a09ecf8b6e2ff09eead;p=jalview.git

diff --git a/src/jalview/xml/binding/uniprot/SourceDataType.java b/src/jalview/xml/binding/uniprot/SourceDataType.java
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+//
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
+// Any modifications to this file will be lost upon recompilation of the source schema. 
+// Generated on: 2018.09.13 at 10:18:53 AM BST 
+//
+
+
+package jalview.xml.binding.uniprot;
+
+import java.util.ArrayList;
+import java.util.List;
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlAttribute;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlElements;
+import javax.xml.bind.annotation.XmlType;
+import javax.xml.bind.annotation.XmlValue;
+
+
+/**
+ * Describes the source of the sequence according to the citation.
+ *             Equivalent to the flat file RC-line.
+ * 
+ * <p>Java class for sourceDataType complex type.
+ * 
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ * 
+ * <pre>
+ * &lt;complexType name="sourceDataType">
+ *   &lt;complexContent>
+ *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       &lt;choice maxOccurs="unbounded">
+ *         &lt;element name="strain">
+ *           &lt;complexType>
+ *             &lt;simpleContent>
+ *               &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema>string">
+ *                 &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ *               &lt;/extension>
+ *             &lt;/simpleContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *         &lt;element name="plasmid">
+ *           &lt;complexType>
+ *             &lt;simpleContent>
+ *               &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema>string">
+ *                 &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ *               &lt;/extension>
+ *             &lt;/simpleContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *         &lt;element name="transposon">
+ *           &lt;complexType>
+ *             &lt;simpleContent>
+ *               &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema>string">
+ *                 &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ *               &lt;/extension>
+ *             &lt;/simpleContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *         &lt;element name="tissue">
+ *           &lt;complexType>
+ *             &lt;simpleContent>
+ *               &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema>string">
+ *                 &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ *               &lt;/extension>
+ *             &lt;/simpleContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *       &lt;/choice>
+ *     &lt;/restriction>
+ *   &lt;/complexContent>
+ * &lt;/complexType>
+ * </pre>
+ * 
+ * 
+ */
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "sourceDataType", propOrder = {
+    "strainOrPlasmidOrTransposon"
+})
+public class SourceDataType {
+
+    @XmlElements({
+        @XmlElement(name = "strain", type = SourceDataType.Strain.class),
+        @XmlElement(name = "plasmid", type = SourceDataType.Plasmid.class),
+        @XmlElement(name = "transposon", type = SourceDataType.Transposon.class),
+        @XmlElement(name = "tissue", type = SourceDataType.Tissue.class)
+    })
+    protected List<Object> strainOrPlasmidOrTransposon;
+
+    /**
+     * Gets the value of the strainOrPlasmidOrTransposon property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the strainOrPlasmidOrTransposon property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getStrainOrPlasmidOrTransposon().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link SourceDataType.Strain }
+     * {@link SourceDataType.Plasmid }
+     * {@link SourceDataType.Transposon }
+     * {@link SourceDataType.Tissue }
+     * 
+     * 
+     */
+    public List<Object> getStrainOrPlasmidOrTransposon() {
+        if (strainOrPlasmidOrTransposon == null) {
+            strainOrPlasmidOrTransposon = new ArrayList<Object>();
+        }
+        return this.strainOrPlasmidOrTransposon;
+    }
+
+
+    /**
+     * <p>Java class for anonymous complex type.
+     * 
+     * <p>The following schema fragment specifies the expected content contained within this class.
+     * 
+     * <pre>
+     * &lt;complexType>
+     *   &lt;simpleContent>
+     *     &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema>string">
+     *       &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+     *     &lt;/extension>
+     *   &lt;/simpleContent>
+     * &lt;/complexType>
+     * </pre>
+     * 
+     * 
+     */
+    @XmlAccessorType(XmlAccessType.FIELD)
+    @XmlType(name = "", propOrder = {
+        "value"
+    })
+    public static class Plasmid {
+
+        @XmlValue
+        protected String value;
+        @XmlAttribute(name = "evidence")
+        protected List<Integer> evidence;
+
+        /**
+         * Gets the value of the value property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link String }
+         *     
+         */
+        public String getValue() {
+            return value;
+        }
+
+        /**
+         * Sets the value of the value property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link String }
+         *     
+         */
+        public void setValue(String value) {
+            this.value = value;
+        }
+
+        /**
+         * Gets the value of the evidence property.
+         * 
+         * <p>
+         * This accessor method returns a reference to the live list,
+         * not a snapshot. Therefore any modification you make to the
+         * returned list will be present inside the JAXB object.
+         * This is why there is not a <CODE>set</CODE> method for the evidence property.
+         * 
+         * <p>
+         * For example, to add a new item, do as follows:
+         * <pre>
+         *    getEvidence().add(newItem);
+         * </pre>
+         * 
+         * 
+         * <p>
+         * Objects of the following type(s) are allowed in the list
+         * {@link Integer }
+         * 
+         * 
+         */
+        public List<Integer> getEvidence() {
+            if (evidence == null) {
+                evidence = new ArrayList<Integer>();
+            }
+            return this.evidence;
+        }
+
+    }
+
+
+    /**
+     * <p>Java class for anonymous complex type.
+     * 
+     * <p>The following schema fragment specifies the expected content contained within this class.
+     * 
+     * <pre>
+     * &lt;complexType>
+     *   &lt;simpleContent>
+     *     &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema>string">
+     *       &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+     *     &lt;/extension>
+     *   &lt;/simpleContent>
+     * &lt;/complexType>
+     * </pre>
+     * 
+     * 
+     */
+    @XmlAccessorType(XmlAccessType.FIELD)
+    @XmlType(name = "", propOrder = {
+        "value"
+    })
+    public static class Strain {
+
+        @XmlValue
+        protected String value;
+        @XmlAttribute(name = "evidence")
+        protected List<Integer> evidence;
+
+        /**
+         * Gets the value of the value property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link String }
+         *     
+         */
+        public String getValue() {
+            return value;
+        }
+
+        /**
+         * Sets the value of the value property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link String }
+         *     
+         */
+        public void setValue(String value) {
+            this.value = value;
+        }
+
+        /**
+         * Gets the value of the evidence property.
+         * 
+         * <p>
+         * This accessor method returns a reference to the live list,
+         * not a snapshot. Therefore any modification you make to the
+         * returned list will be present inside the JAXB object.
+         * This is why there is not a <CODE>set</CODE> method for the evidence property.
+         * 
+         * <p>
+         * For example, to add a new item, do as follows:
+         * <pre>
+         *    getEvidence().add(newItem);
+         * </pre>
+         * 
+         * 
+         * <p>
+         * Objects of the following type(s) are allowed in the list
+         * {@link Integer }
+         * 
+         * 
+         */
+        public List<Integer> getEvidence() {
+            if (evidence == null) {
+                evidence = new ArrayList<Integer>();
+            }
+            return this.evidence;
+        }
+
+    }
+
+
+    /**
+     * <p>Java class for anonymous complex type.
+     * 
+     * <p>The following schema fragment specifies the expected content contained within this class.
+     * 
+     * <pre>
+     * &lt;complexType>
+     *   &lt;simpleContent>
+     *     &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema>string">
+     *       &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+     *     &lt;/extension>
+     *   &lt;/simpleContent>
+     * &lt;/complexType>
+     * </pre>
+     * 
+     * 
+     */
+    @XmlAccessorType(XmlAccessType.FIELD)
+    @XmlType(name = "", propOrder = {
+        "value"
+    })
+    public static class Tissue {
+
+        @XmlValue
+        protected String value;
+        @XmlAttribute(name = "evidence")
+        protected List<Integer> evidence;
+
+        /**
+         * Gets the value of the value property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link String }
+         *     
+         */
+        public String getValue() {
+            return value;
+        }
+
+        /**
+         * Sets the value of the value property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link String }
+         *     
+         */
+        public void setValue(String value) {
+            this.value = value;
+        }
+
+        /**
+         * Gets the value of the evidence property.
+         * 
+         * <p>
+         * This accessor method returns a reference to the live list,
+         * not a snapshot. Therefore any modification you make to the
+         * returned list will be present inside the JAXB object.
+         * This is why there is not a <CODE>set</CODE> method for the evidence property.
+         * 
+         * <p>
+         * For example, to add a new item, do as follows:
+         * <pre>
+         *    getEvidence().add(newItem);
+         * </pre>
+         * 
+         * 
+         * <p>
+         * Objects of the following type(s) are allowed in the list
+         * {@link Integer }
+         * 
+         * 
+         */
+        public List<Integer> getEvidence() {
+            if (evidence == null) {
+                evidence = new ArrayList<Integer>();
+            }
+            return this.evidence;
+        }
+
+    }
+
+
+    /**
+     * <p>Java class for anonymous complex type.
+     * 
+     * <p>The following schema fragment specifies the expected content contained within this class.
+     * 
+     * <pre>
+     * &lt;complexType>
+     *   &lt;simpleContent>
+     *     &lt;extension base="&lt;http://www.w3.org/2001/XMLSchema>string">
+     *       &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+     *     &lt;/extension>
+     *   &lt;/simpleContent>
+     * &lt;/complexType>
+     * </pre>
+     * 
+     * 
+     */
+    @XmlAccessorType(XmlAccessType.FIELD)
+    @XmlType(name = "", propOrder = {
+        "value"
+    })
+    public static class Transposon {
+
+        @XmlValue
+        protected String value;
+        @XmlAttribute(name = "evidence")
+        protected List<Integer> evidence;
+
+        /**
+         * Gets the value of the value property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link String }
+         *     
+         */
+        public String getValue() {
+            return value;
+        }
+
+        /**
+         * Sets the value of the value property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link String }
+         *     
+         */
+        public void setValue(String value) {
+            this.value = value;
+        }
+
+        /**
+         * Gets the value of the evidence property.
+         * 
+         * <p>
+         * This accessor method returns a reference to the live list,
+         * not a snapshot. Therefore any modification you make to the
+         * returned list will be present inside the JAXB object.
+         * This is why there is not a <CODE>set</CODE> method for the evidence property.
+         * 
+         * <p>
+         * For example, to add a new item, do as follows:
+         * <pre>
+         *    getEvidence().add(newItem);
+         * </pre>
+         * 
+         * 
+         * <p>
+         * Objects of the following type(s) are allowed in the list
+         * {@link Integer }
+         * 
+         * 
+         */
+        public List<Integer> getEvidence() {
+            if (evidence == null) {
+                evidence = new ArrayList<Integer>();
+            }
+            return this.evidence;
+        }
+
+    }
+
+}