X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fmc_view%2FPDBChain.java;fp=src%2Fmc_view%2FPDBChain.java;h=2970ccf05e136b2b3a04a9d5f2a19e62c7b8ae55;hb=80b889f0cca49103e1b20ed806755a0719789906;hp=c56a9473b3ef80880587fb1ba711c881d50b47a2;hpb=8288438dd58cfc2d1fe18a060afda0d647b85c32;p=jalview.git

diff --git a/src/mc_view/PDBChain.java b/src/mc_view/PDBChain.java
index c56a947..2970ccf 100755
--- a/src/mc_view/PDBChain.java
+++ b/src/mc_view/PDBChain.java
@@ -703,7 +703,8 @@ public class PDBChain
               dsq.addAlignmentAnnotation(ana);
               if (cm != null && cm instanceof MappableContactMatrixI)
               {
-                dsq.addContactListFor(ana, ((MappableContactMatrixI) cm).liftOver(dsq,sqmpping));
+                dsq.addContactListFor(ana, ((MappableContactMatrixI) cm)
+                        .liftOver(dsq, sqmpping));
               }
             }
             else
@@ -718,8 +719,8 @@ public class PDBChain
         // Useful for debugging mappings - adds annotation for mapped position
         float min = -1, max = 0;
         Annotation[] an = new Annotation[sq.getEnd() - sq.getStart() + 1];
-        for (int i = sq.getStart(), j = sq.getEnd(),
-                k = 0; i <= j; i++, k++)
+        for (int i = sq.getStart(), j = sq
+                .getEnd(), k = 0; i <= j; i++, k++)
         {
           int prn = mapping.getPDBResNum(k + 1);