X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Fvamsas%2Fobjects%2Fcore%2FLink.java;h=20a90a5a0544907c16750b30efc8cb142fab61f3;hb=1eea4b639911330e7cd65e17c5421cc584f0d22e;hp=ac155e830e635ce33fb35cb0e6b3fd5fd65f3a3b;hpb=a06295cc0912455e0bc53b26cb4e0134e6759d0f;p=vamsas.git

diff --git a/src/uk/ac/vamsas/objects/core/Link.java b/src/uk/ac/vamsas/objects/core/Link.java
index ac155e8..20a90a5 100644
--- a/src/uk/ac/vamsas/objects/core/Link.java
+++ b/src/uk/ac/vamsas/objects/core/Link.java
@@ -1,217 +1,292 @@
 /*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
- * Schema.
- * $Id$
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ *  Andrew Waterhouse and Dominik Lindner.
+ * 
+ * Earlier versions have also been incorporated into Jalview version 2.4 
+ * since 2008, and TOPALi version 2 since 2007.
+ * 
+ * The Vamsas Client is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *  
+ * The Vamsas Client is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
  */
-
 package uk.ac.vamsas.objects.core;
 
-  //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
 //---------------------------------/
 
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import org.exolab.castor.xml.MarshalException;
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
 
 /**
  * Class Link.
  * 
  * @version $Revision$ $Date$
  */
-public class Link extends uk.ac.vamsas.client.Vobject 
-implements java.io.Serializable
-{
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * internal content storage
-     */
-    private java.lang.String _content = "";
-
-    /**
-     * The URI
-     */
-    private java.lang.String _href;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public Link() 
-     {
-        super();
-        setContent("");
-    } //-- uk.ac.vamsas.objects.core.Link()
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Note: hashCode() has not been overriden
-     * 
-     * @param obj
-     * @return boolean
-     */
-    public boolean equals(java.lang.Object obj)
-    {
-        if ( this == obj )
-            return true;
-        
-        if (super.equals(obj)==false)
-            return false;
-        
-        if (obj instanceof Link) {
-        
-            Link temp = (Link)obj;
-            if (this._content != null) {
-                if (temp._content == null) return false;
-                else if (!(this._content.equals(temp._content))) 
-                    return false;
+public class Link extends uk.ac.vamsas.client.Vobject implements
+    java.io.Serializable {
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * internal content storage
+   */
+  private java.lang.String _content = "";
+
+  /**
+   * The URI
+   */
+  private java.lang.String _href;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public Link() {
+    super();
+    setContent("");
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * Overrides the java.lang.Object.equals method.
+   * 
+   * @param obj
+   * @return true if the objects are equal.
+   */
+  public boolean equals(final java.lang.Object obj) {
+    if (this == obj)
+      return true;
+
+    if (super.equals(obj) == false)
+      return false;
+
+    if (obj instanceof Link) {
+
+      Link temp = (Link) obj;
+      boolean thcycle;
+      boolean tmcycle;
+      if (this._content != null) {
+        if (temp._content == null)
+          return false;
+        if (this._content != temp._content) {
+          thcycle = org.castor.util.CycleBreaker.startingToCycle(this._content);
+          tmcycle = org.castor.util.CycleBreaker.startingToCycle(temp._content);
+          if (thcycle != tmcycle) {
+            if (!thcycle) {
+              org.castor.util.CycleBreaker.releaseCycleHandle(this._content);
             }
-            else if (temp._content != null)
-                return false;
-            if (this._href != null) {
-                if (temp._href == null) return false;
-                else if (!(this._href.equals(temp._href))) 
-                    return false;
+            ;
+            if (!tmcycle) {
+              org.castor.util.CycleBreaker.releaseCycleHandle(temp._content);
+            }
+            ;
+            return false;
+          }
+          if (!thcycle) {
+            if (!this._content.equals(temp._content)) {
+              org.castor.util.CycleBreaker.releaseCycleHandle(this._content);
+              org.castor.util.CycleBreaker.releaseCycleHandle(temp._content);
+              return false;
             }
-            else if (temp._href != null)
-                return false;
-            return true;
+            org.castor.util.CycleBreaker.releaseCycleHandle(this._content);
+            org.castor.util.CycleBreaker.releaseCycleHandle(temp._content);
+          }
         }
+      } else if (temp._content != null)
         return false;
-    } //-- boolean equals(java.lang.Object) 
-
-    /**
-     * Returns the value of field 'content'. The field 'content'
-     * has the following description: internal content storage
-     * 
-     * @return String
-     * @return the value of field 'content'.
-     */
-    public java.lang.String getContent()
-    {
-        return this._content;
-    } //-- java.lang.String getContent() 
-
-    /**
-     * Returns the value of field 'href'. The field 'href' has the
-     * following description: The URI
-     * 
-     * @return String
-     * @return the value of field 'href'.
-     */
-    public java.lang.String getHref()
-    {
-        return this._href;
-    } //-- java.lang.String getHref() 
-
-    /**
-     * Method isValid
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean isValid()
-    {
-        try {
-            validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex) {
+      if (this._href != null) {
+        if (temp._href == null)
+          return false;
+        if (this._href != temp._href) {
+          thcycle = org.castor.util.CycleBreaker.startingToCycle(this._href);
+          tmcycle = org.castor.util.CycleBreaker.startingToCycle(temp._href);
+          if (thcycle != tmcycle) {
+            if (!thcycle) {
+              org.castor.util.CycleBreaker.releaseCycleHandle(this._href);
+            }
+            ;
+            if (!tmcycle) {
+              org.castor.util.CycleBreaker.releaseCycleHandle(temp._href);
+            }
+            ;
             return false;
+          }
+          if (!thcycle) {
+            if (!this._href.equals(temp._href)) {
+              org.castor.util.CycleBreaker.releaseCycleHandle(this._href);
+              org.castor.util.CycleBreaker.releaseCycleHandle(temp._href);
+              return false;
+            }
+            org.castor.util.CycleBreaker.releaseCycleHandle(this._href);
+            org.castor.util.CycleBreaker.releaseCycleHandle(temp._href);
+          }
         }
-        return true;
-    } //-- boolean isValid() 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param out
-     */
-    public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param handler
-     */
-    public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
-
-    /**
-     * Sets the value of field 'content'. The field 'content' has
-     * the following description: internal content storage
-     * 
-     * @param content the value of field 'content'.
-     */
-    public void setContent(java.lang.String content)
-    {
-        this._content = content;
-    } //-- void setContent(java.lang.String) 
-
-    /**
-     * Sets the value of field 'href'. The field 'href' has the
-     * following description: The URI
-     * 
-     * @param href the value of field 'href'.
-     */
-    public void setHref(java.lang.String href)
-    {
-        this._href = href;
-    } //-- void setHref(java.lang.String) 
-
-    /**
-     * Method unmarshal
-     * 
-     * 
-     * 
-     * @param reader
-     * @return Link
-     */
-    public static uk.ac.vamsas.objects.core.Link unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        return (uk.ac.vamsas.objects.core.Link) Unmarshaller.unmarshal(uk.ac.vamsas.objects.core.Link.class, reader);
-    } //-- uk.ac.vamsas.objects.core.Link unmarshal(java.io.Reader) 
-
-    /**
-     * Method validate
-     * 
-     */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
-    {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    } //-- void validate() 
+      } else if (temp._href != null)
+        return false;
+      return true;
+    }
+    return false;
+  }
+
+  /**
+   * Returns the value of field 'content'. The field 'content' has the following
+   * description: internal content storage
+   * 
+   * @return the value of field 'Content'.
+   */
+  public java.lang.String getContent() {
+    return this._content;
+  }
+
+  /**
+   * Returns the value of field 'href'. The field 'href' has the following
+   * description: The URI
+   * 
+   * @return the value of field 'Href'.
+   */
+  public java.lang.String getHref() {
+    return this._href;
+  }
+
+  /**
+   * Overrides the java.lang.Object.hashCode method.
+   * <p>
+   * The following steps came from <b>Effective Java Programming Language
+   * Guide</b> by Joshua Bloch, Chapter 3
+   * 
+   * @return a hash code value for the object.
+   */
+  public int hashCode() {
+    int result = super.hashCode();
+
+    long tmp;
+    if (_content != null
+        && !org.castor.util.CycleBreaker.startingToCycle(_content)) {
+      result = 37 * result + _content.hashCode();
+      org.castor.util.CycleBreaker.releaseCycleHandle(_content);
+    }
+    if (_href != null && !org.castor.util.CycleBreaker.startingToCycle(_href)) {
+      result = 37 * result + _href.hashCode();
+      org.castor.util.CycleBreaker.releaseCycleHandle(_href);
+    }
+
+    return result;
+  }
+
+  /**
+   * Method isValid.
+   * 
+   * @return true if this object is valid according to the schema
+   */
+  public boolean isValid() {
+    try {
+      validate();
+    } catch (org.exolab.castor.xml.ValidationException vex) {
+      return false;
+    }
+    return true;
+  }
+
+  /**
+   * 
+   * 
+   * @param out
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void marshal(final java.io.Writer out)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException {
+    Marshaller.marshal(this, out);
+  }
+
+  /**
+   * 
+   * 
+   * @param handler
+   * @throws java.io.IOException
+   *           if an IOException occurs during marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   */
+  public void marshal(final org.xml.sax.ContentHandler handler)
+      throws java.io.IOException, org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException {
+    Marshaller.marshal(this, handler);
+  }
+
+  /**
+   * Sets the value of field 'content'. The field 'content' has the following
+   * description: internal content storage
+   * 
+   * @param content
+   *          the value of field 'content'.
+   */
+  public void setContent(final java.lang.String content) {
+    this._content = content;
+  }
+
+  /**
+   * Sets the value of field 'href'. The field 'href' has the following
+   * description: The URI
+   * 
+   * @param href
+   *          the value of field 'href'.
+   */
+  public void setHref(final java.lang.String href) {
+    this._href = href;
+  }
+
+  /**
+   * Method unmarshal.
+   * 
+   * @param reader
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @return the unmarshaled uk.ac.vamsas.objects.core.Link
+   */
+  public static uk.ac.vamsas.objects.core.Link unmarshal(
+      final java.io.Reader reader)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException {
+    return (uk.ac.vamsas.objects.core.Link) Unmarshaller.unmarshal(
+        uk.ac.vamsas.objects.core.Link.class, reader);
+  }
+
+  /**
+   * 
+   * 
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void validate() throws org.exolab.castor.xml.ValidationException {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+    validator.validate(this);
+  }
 
 }