X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Fvamsas%2Fobjects%2Fcore%2FPos.java;h=3877be5593269659abc8fde2905d7714cb71242a;hb=1890f014c0a312a7a2203c878e4802e3eb914e47;hp=7a9827669327e7267dac9b007cd5280ed2e8a294;hpb=de558440c776d39285b02d970a21df7002e85a3c;p=vamsas.git

diff --git a/src/uk/ac/vamsas/objects/core/Pos.java b/src/uk/ac/vamsas/objects/core/Pos.java
index 7a98276..3877be5 100644
--- a/src/uk/ac/vamsas/objects/core/Pos.java
+++ b/src/uk/ac/vamsas/objects/core/Pos.java
@@ -77,6 +77,8 @@ implements java.io.Serializable
         if (obj instanceof Pos) {
         
             Pos temp = (Pos)obj;
+            boolean thcycle;
+            boolean tmcycle;
             if (this._i != temp._i)
                 return false;
             if (this._has_i != temp._has_i)