Note: Just in case the collection contents - * are changing in another thread, we pass a 0-length Array of - * the correct type into the API call. This way we know - * that the Array returned is of exactly the correct length. - * - * @return this collection as an Array - */ - public uk.ac.vamsas.objects.core.Property[] getProperty( - ) { - uk.ac.vamsas.objects.core.Property[] array = new uk.ac.vamsas.objects.core.Property[0]; - return (uk.ac.vamsas.objects.core.Property[]) this._propertyList.toArray(array); - } - - /** - * Method getPropertyAsReference.Returns a reference to - * '_propertyList'. No type checking is performed on any - * modifications to the Vector. - * - * @return a reference to the Vector backing this class - */ - public java.util.Vector getPropertyAsReference( - ) { - return this._propertyList; - } - - /** - * Method getPropertyCount. - * - * @return the size of this collection - */ - public int getPropertyCount( - ) { - return this._propertyList.size(); - } - - /** - * Returns the value of field 'sequence'. - * - * @return the value of field 'Sequence'. - */ - public java.lang.String getSequence( - ) { - return this._sequence; - } - - /** - * Returns the value of field 'start'. - * - * @return the value of field 'Start'. - */ - public long getStart( - ) { - return this._start; - } - - /** - * Method hasEnd. - * - * @return true if at least one End has been added - */ - public boolean hasEnd( - ) { - return this._has_end; - } - - /** - * Method hasStart. - * - * @return true if at least one Start has been added - */ - public boolean hasStart( - ) { - return this._has_start; - } - - /** - * Overrides the java.lang.Object.hashCode method. - *
- * The following steps came from Effective Java Programming - * Language Guide by Joshua Bloch, Chapter 3 - * - * @return a hash code value for the object. - */ - public int hashCode( - ) { - int result = super.hashCode(); - - long tmp; - result = 37 * result + (int)(_start^(_start>>>32)); - result = 37 * result + (int)(_end^(_end>>>32)); - if (_sequence != null) { - result = 37 * result + _sequence.hashCode(); - } - if (_name != null) { - result = 37 * result + _name.hashCode(); - } - if (_description != null) { - result = 37 * result + _description.hashCode(); - } - if (_propertyList != null) { - result = 37 * result + _propertyList.hashCode(); - } - - return result; - } - - /** - * Method isValid. - * - * @return true if this object is valid according to the schema - */ - public boolean isValid( - ) { - try { - validate(); - } catch (org.exolab.castor.xml.ValidationException vex) { + if (this._description != null) { + if (temp._description == null) + return false; + if (this._description != temp._description) { + thcycle = org.castor.util.CycleBreaker + .startingToCycle(this._description); + tmcycle = org.castor.util.CycleBreaker + .startingToCycle(temp._description); + if (thcycle != tmcycle) { + if (!thcycle) { + org.castor.util.CycleBreaker + .releaseCycleHandle(this._description); + } + ; + if (!tmcycle) { + org.castor.util.CycleBreaker + .releaseCycleHandle(temp._description); + } + ; return false; + } + if (!thcycle) { + if (!this._description.equals(temp._description)) { + org.castor.util.CycleBreaker + .releaseCycleHandle(this._description); + org.castor.util.CycleBreaker + .releaseCycleHandle(temp._description); + return false; + } + org.castor.util.CycleBreaker.releaseCycleHandle(this._description); + org.castor.util.CycleBreaker.releaseCycleHandle(temp._description); + } } - return true; - } - - /** - * - * - * @param out - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - */ - public void marshal( - final java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, out); - } - - /** - * - * - * @param handler - * @throws java.io.IOException if an IOException occurs during - * marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - */ - public void marshal( - final org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, handler); - } - - /** - */ - public void removeAllProperty( - ) { - this._propertyList.clear(); - } - - /** - * Method removeProperty. - * - * @param vProperty - * @return true if the object was removed from the collection. - */ - public boolean removeProperty( - final uk.ac.vamsas.objects.core.Property vProperty) { - boolean removed = _propertyList.remove(vProperty); - return removed; - } - - /** - * Method removePropertyAt. - * - * @param index - * @return the element removed from the collection - */ - public uk.ac.vamsas.objects.core.Property removePropertyAt( - final int index) { - java.lang.Object obj = this._propertyList.remove(index); - return (uk.ac.vamsas.objects.core.Property) obj; - } - - /** - * Sets the value of field 'description'. - * - * @param description the value of field 'description'. - */ - public void setDescription( - final java.lang.String description) { - this._description = description; - } - - /** - * Sets the value of field 'end'. - * - * @param end the value of field 'end'. - */ - public void setEnd( - final long end) { - this._end = end; - this._has_end = true; - } - - /** - * Sets the value of field 'name'. - * - * @param name the value of field 'name'. - */ - public void setName( - final java.lang.String name) { - this._name = name; - } - - /** - * - * - * @param index - * @param vProperty - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - */ - public void setProperty( - final int index, - final uk.ac.vamsas.objects.core.Property vProperty) - throws java.lang.IndexOutOfBoundsException { - // check bounds for index - if (index < 0 || index >= this._propertyList.size()) { - throw new IndexOutOfBoundsException("setProperty: Index value '" + index + "' not in range [0.." + (this._propertyList.size() - 1) + "]"); - } - - this._propertyList.set(index, vProperty); - } - - /** - * - * - * @param vPropertyArray - */ - public void setProperty( - final uk.ac.vamsas.objects.core.Property[] vPropertyArray) { - //-- copy array - _propertyList.clear(); - - for (int i = 0; i < vPropertyArray.length; i++) { - this._propertyList.add(vPropertyArray[i]); + } else if (temp._description != null) + return false; + if (this._propertyList != null) { + if (temp._propertyList == null) + return false; + if (this._propertyList != temp._propertyList) { + thcycle = org.castor.util.CycleBreaker + .startingToCycle(this._propertyList); + tmcycle = org.castor.util.CycleBreaker + .startingToCycle(temp._propertyList); + if (thcycle != tmcycle) { + if (!thcycle) { + org.castor.util.CycleBreaker + .releaseCycleHandle(this._propertyList); + } + ; + if (!tmcycle) { + org.castor.util.CycleBreaker + .releaseCycleHandle(temp._propertyList); + } + ; + return false; + } + if (!thcycle) { + if (!this._propertyList.equals(temp._propertyList)) { + org.castor.util.CycleBreaker + .releaseCycleHandle(this._propertyList); + org.castor.util.CycleBreaker + .releaseCycleHandle(temp._propertyList); + return false; + } + org.castor.util.CycleBreaker.releaseCycleHandle(this._propertyList); + org.castor.util.CycleBreaker.releaseCycleHandle(temp._propertyList); + } } - } - - /** - * Sets the value of '_propertyList' by copying the given - * Vector. All elements will be checked for type safety. - * - * @param vPropertyList the Vector to copy. - */ - public void setProperty( - final java.util.Vector vPropertyList) { - // copy vector - this._propertyList.clear(); - - this._propertyList.addAll(vPropertyList); - } - - /** - * Sets the value of '_propertyList' by setting it to the given - * Vector. No type checking is performed. - * @deprecated - * - * @param propertyVector the Vector to set. - */ - public void setPropertyAsReference( - final java.util.Vector propertyVector) { - this._propertyList = propertyVector; - } - - /** - * Sets the value of field 'sequence'. - * - * @param sequence the value of field 'sequence'. - */ - public void setSequence( - final java.lang.String sequence) { - this._sequence = sequence; - } - - /** - * Sets the value of field 'start'. - * - * @param start the value of field 'start'. - */ - public void setStart( - final long start) { - this._start = start; - this._has_start = true; - } - - /** - * Method unmarshal. - * - * @param reader - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - * @return the unmarshaled uk.ac.vamsas.objects.core.SequenceTyp - */ - public static uk.ac.vamsas.objects.core.SequenceType unmarshal( - final java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - return (uk.ac.vamsas.objects.core.SequenceType) Unmarshaller.unmarshal(uk.ac.vamsas.objects.core.SequenceType.class, reader); - } - - /** - * - * - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - */ - public void validate( - ) - throws org.exolab.castor.xml.ValidationException { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); - validator.validate(this); - } + } else if (temp._propertyList != null) + return false; + return true; + } + return false; + } + + /** + * Returns the value of field 'description'. + * + * @return the value of field 'Description'. + */ + public java.lang.String getDescription() { + return this._description; + } + + /** + * Returns the value of field 'end'. + * + * @return the value of field 'End'. + */ + public long getEnd() { + return this._end; + } + + /** + * Returns the value of field 'name'. + * + * @return the value of field 'Name'. + */ + public java.lang.String getName() { + return this._name; + } + + /** + * Method getProperty. + * + * @param index + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + * @return the value of the uk.ac.vamsas.objects.core.Property at the given + * index + */ + public uk.ac.vamsas.objects.core.Property getProperty(final int index) + throws java.lang.IndexOutOfBoundsException { + // check bounds for index + if (index < 0 || index >= this._propertyList.size()) { + throw new IndexOutOfBoundsException("getProperty: Index value '" + index + + "' not in range [0.." + (this._propertyList.size() - 1) + "]"); + } + + return (uk.ac.vamsas.objects.core.Property) _propertyList.get(index); + } + + /** + * Method getProperty.Returns the contents of the collection in an Array. + *
+ * Note: Just in case the collection contents are changing in another thread, + * we pass a 0-length Array of the correct type into the API call. This way we + * know that the Array returned is of exactly the correct length. + * + * @return this collection as an Array + */ + public uk.ac.vamsas.objects.core.Property[] getProperty() { + uk.ac.vamsas.objects.core.Property[] array = new uk.ac.vamsas.objects.core.Property[0]; + return (uk.ac.vamsas.objects.core.Property[]) this._propertyList + .toArray(array); + } + + /** + * Method getPropertyAsReference.Returns a reference to '_propertyList'. No + * type checking is performed on any modifications to the Vector. + * + * @return a reference to the Vector backing this class + */ + public java.util.Vector getPropertyAsReference() { + return this._propertyList; + } + + /** + * Method getPropertyCount. + * + * @return the size of this collection + */ + public int getPropertyCount() { + return this._propertyList.size(); + } + + /** + * Returns the value of field 'sequence'. + * + * @return the value of field 'Sequence'. + */ + public java.lang.String getSequence() { + return this._sequence; + } + + /** + * Returns the value of field 'start'. + * + * @return the value of field 'Start'. + */ + public long getStart() { + return this._start; + } + + /** + * Method hasEnd. + * + * @return true if at least one End has been added + */ + public boolean hasEnd() { + return this._has_end; + } + + /** + * Method hasStart. + * + * @return true if at least one Start has been added + */ + public boolean hasStart() { + return this._has_start; + } + + /** + * Overrides the java.lang.Object.hashCode method. + *
+ * The following steps came from Effective Java Programming Language + * Guide by Joshua Bloch, Chapter 3 + * + * @return a hash code value for the object. + */ + public int hashCode() { + int result = super.hashCode(); + + long tmp; + result = 37 * result + (int) (_start ^ (_start >>> 32)); + result = 37 * result + (int) (_end ^ (_end >>> 32)); + if (_sequence != null + && !org.castor.util.CycleBreaker.startingToCycle(_sequence)) { + result = 37 * result + _sequence.hashCode(); + org.castor.util.CycleBreaker.releaseCycleHandle(_sequence); + } + if (_name != null && !org.castor.util.CycleBreaker.startingToCycle(_name)) { + result = 37 * result + _name.hashCode(); + org.castor.util.CycleBreaker.releaseCycleHandle(_name); + } + if (_description != null + && !org.castor.util.CycleBreaker.startingToCycle(_description)) { + result = 37 * result + _description.hashCode(); + org.castor.util.CycleBreaker.releaseCycleHandle(_description); + } + if (_propertyList != null + && !org.castor.util.CycleBreaker.startingToCycle(_propertyList)) { + result = 37 * result + _propertyList.hashCode(); + org.castor.util.CycleBreaker.releaseCycleHandle(_propertyList); + } + + return result; + } + + /** + * Method isValid. + * + * @return true if this object is valid according to the schema + */ + public boolean isValid() { + try { + validate(); + } catch (org.exolab.castor.xml.ValidationException vex) { + return false; + } + return true; + } + + /** + * + * + * @param out + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + */ + public void marshal(final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, out); + } + + /** + * + * + * @param handler + * @throws java.io.IOException + * if an IOException occurs during marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + */ + public void marshal(final org.xml.sax.ContentHandler handler) + throws java.io.IOException, org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, handler); + } + + /** + */ + public void removeAllProperty() { + this._propertyList.clear(); + } + + /** + * Method removeProperty. + * + * @param vProperty + * @return true if the object was removed from the collection. + */ + public boolean removeProperty( + final uk.ac.vamsas.objects.core.Property vProperty) { + boolean removed = _propertyList.remove(vProperty); + return removed; + } + + /** + * Method removePropertyAt. + * + * @param index + * @return the element removed from the collection + */ + public uk.ac.vamsas.objects.core.Property removePropertyAt(final int index) { + java.lang.Object obj = this._propertyList.remove(index); + return (uk.ac.vamsas.objects.core.Property) obj; + } + + /** + * Sets the value of field 'description'. + * + * @param description + * the value of field 'description'. + */ + public void setDescription(final java.lang.String description) { + this._description = description; + } + + /** + * Sets the value of field 'end'. + * + * @param end + * the value of field 'end'. + */ + public void setEnd(final long end) { + this._end = end; + this._has_end = true; + } + + /** + * Sets the value of field 'name'. + * + * @param name + * the value of field 'name'. + */ + public void setName(final java.lang.String name) { + this._name = name; + } + + /** + * + * + * @param index + * @param vProperty + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void setProperty(final int index, + final uk.ac.vamsas.objects.core.Property vProperty) + throws java.lang.IndexOutOfBoundsException { + // check bounds for index + if (index < 0 || index >= this._propertyList.size()) { + throw new IndexOutOfBoundsException("setProperty: Index value '" + index + + "' not in range [0.." + (this._propertyList.size() - 1) + "]"); + } + + this._propertyList.set(index, vProperty); + } + + /** + * + * + * @param vPropertyArray + */ + public void setProperty( + final uk.ac.vamsas.objects.core.Property[] vPropertyArray) { + // -- copy array + _propertyList.clear(); + + for (int i = 0; i < vPropertyArray.length; i++) { + this._propertyList.add(vPropertyArray[i]); + } + } + + /** + * Sets the value of '_propertyList' by copying the given Vector. All elements + * will be checked for type safety. + * + * @param vPropertyList + * the Vector to copy. + */ + public void setProperty(final java.util.Vector vPropertyList) { + // copy vector + this._propertyList.clear(); + + this._propertyList.addAll(vPropertyList); + } + + /** + * Sets the value of '_propertyList' by setting it to the given Vector. No + * type checking is performed. + * + * @deprecated + * + * @param propertyVector + * the Vector to set. + */ + public void setPropertyAsReference(final java.util.Vector propertyVector) { + this._propertyList = propertyVector; + } + + /** + * Sets the value of field 'sequence'. + * + * @param sequence + * the value of field 'sequence'. + */ + public void setSequence(final java.lang.String sequence) { + this._sequence = sequence; + } + + /** + * Sets the value of field 'start'. + * + * @param start + * the value of field 'start'. + */ + public void setStart(final long start) { + this._start = start; + this._has_start = true; + } + + /** + * Method unmarshal. + * + * @param reader + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + * @return the unmarshaled uk.ac.vamsas.objects.core.SequenceTyp + */ + public static uk.ac.vamsas.objects.core.SequenceType unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException { + return (uk.ac.vamsas.objects.core.SequenceType) Unmarshaller.unmarshal( + uk.ac.vamsas.objects.core.SequenceType.class, reader); + } + + /** + * + * + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + */ + public void validate() throws org.exolab.castor.xml.ValidationException { + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); + validator.validate(this); + } }