X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Fvamsas%2Fobjects%2Futils%2FSymbolDictionary.java;h=6cd81a84f64e6750ac6840d5997e5123f8e1cb23;hb=844ccad5a3fcbedec17b2af66d460f31abc7cff1;hp=b8ac66fb2be87ebb5eb216a00a8402fdf821b124;hpb=a9e0b2497cae20cee8ec0d8c66d51e0d819b8581;p=vamsas.git

diff --git a/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java b/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
index b8ac66f..6cd81a8 100644
--- a/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
+++ b/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
@@ -1,19 +1,50 @@
-package uk.ac.vamsas.objects.utils;
-
-public class SymbolDictionary {
-  /**
-   * defines standard names and properties for vamsas sequence dictionaries
-   */
-  static final public String STANDARD_AA="info:iubmb.org/aminoacids"; // strict 1 letter code
-  static final public String STANDARD_NA="info:iubmb.org/nucleosides";// strict 1 letter code (do not allow arbitrary rare nucleosides)
-  /**
-   * TODO: Vamsas Dictionary properties interface
-   * an interface for dictionary provides :
-   * validation for a string
-   * symbolwidth (or symbol next/previous)
-   * mappings to certain other dictionaries (one2three, etc)
-   * gap-character test
-   * 
-   */
-  
-}
+/*
+ * This file is part of the Vamsas Client version 0.1. 
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ *  Andrew Waterhouse and Dominik Lindner.
+ * 
+ * Earlier versions have also been incorporated into Jalview version 2.4 
+ * since 2008, and TOPALi version 2 since 2007.
+ * 
+ * The Vamsas Client is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *  
+ * The Vamsas Client is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+ */
+package uk.ac.vamsas.objects.utils;
+
+public class SymbolDictionary {
+  /**
+   * defines standard names and properties for vamsas sequence dictionaries
+   */
+  static final public String STANDARD_AA = "info:iubmb.org/aminoacids"; // strict
+                                                                        // 1
+                                                                        // letter
+                                                                        // code
+
+  static final public String STANDARD_NA = "info:iubmb.org/nucleosides";// strict
+                                                                        // 1
+                                                                        // letter
+                                                                        // code
+                                                                        // (do
+                                                                        // not
+                                                                        // allow
+                                                                        // arbitrary
+                                                                        // rare
+                                                                        // nucleosides)
+  /**
+   * TODO: Vamsas Dictionary properties interface an interface for dictionary
+   * provides : validation for a string symbolwidth (or symbol next/previous)
+   * mappings to certain other dictionaries (one2three, etc) gap-character test
+   * 
+   */
+
+}