X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src2%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Frna%2FModeleBackboneElement.java;fp=src2%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Frna%2FModeleBackboneElement.java;h=0000000000000000000000000000000000000000;hb=d27359893c99db0e749a59d8a7ab73ea751da09e;hp=6b16a05b3208262c3b62859f83b81ea67c60609a;hpb=9f55415c9f8005e9dcd8243453883ff853fd5b76;p=jalview.git

diff --git a/src2/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java b/src2/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java
deleted file mode 100644
index 6b16a05..0000000
--- a/src2/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java
+++ /dev/null
@@ -1,106 +0,0 @@
-package fr.orsay.lri.varna.models.rna;
-
-import java.awt.Color;
-import java.io.Serializable;
-
-import javax.xml.transform.sax.TransformerHandler;
-
-import org.xml.sax.SAXException;
-import org.xml.sax.helpers.AttributesImpl;
-
-import fr.orsay.lri.varna.utils.XMLUtils;
-
-public class ModeleBackboneElement implements Serializable{
-
-	/**
-	 * 
-	 */
-	private static final long serialVersionUID = -614968737102943216L;
-
-	public ModeleBackboneElement(int index, BackboneType t)
-	{
-		_index=index;
-		if (t==BackboneType.CUSTOM_COLOR)
-		{
-			throw new IllegalArgumentException("Error: Missing Color while constructing Backbone");
-		}
-		_type=t;
-	}
-	
-	public ModeleBackboneElement(int index, Color c)
-	{
-		_index=index;
-		_type=BackboneType.CUSTOM_COLOR;
-		_color = c;
-	}
-	
-	public enum BackboneType{
-		SOLID_TYPE ("solid"),
-		DISCONTINUOUS_TYPE ("discontinuous"),
-		MISSING_PART_TYPE ("missing"),
-		CUSTOM_COLOR ("custom");
-		
-		private String label;
-		
-		BackboneType(String s)
-		{
-			label = s;
-		}
-		
-		public String getLabel()
-		{
-			return label;
-		}
-		
-		
-		public static BackboneType getType(String lbl)
-		{
-			BackboneType[] vals = BackboneType.values();
-			for(int i=0;i<vals.length;i++)
-			{
-				if (vals[i].equals(lbl))
-					return vals[i];
-			}
-			return null;
-		}
-		
-	};
-	
-	private BackboneType _type;
-	private Color _color = null;
-	private int _index;
-
-	
-	public BackboneType getType()
-	{
-		return _type;
-	}
-	
-	public int getIndex()
-	{
-		return _index;
-	}
-	
-	public Color getColor()
-	{
-		return _color;
-	}
-	
-	public static String XML_ELEMENT_NAME = "BackboneElement";
-	public static String XML_VAR_INDEX_NAME = "index";
-	public static String XML_VAR_TYPE_NAME = "type";
-	public static String XML_VAR_COLOR_NAME = "color";	
-	
-	public void toXML(TransformerHandler hd) throws SAXException
-	{
-		AttributesImpl atts = new AttributesImpl();
-		atts.addAttribute("","",XML_VAR_INDEX_NAME,"CDATA",""+_index);
-		atts.addAttribute("","",XML_VAR_TYPE_NAME,"CDATA",""+_type.getLabel());
-		if(_type==BackboneType.CUSTOM_COLOR){
-			atts.addAttribute("","",XML_VAR_COLOR_NAME,"CDATA",""+XMLUtils.toHTMLNotation(_color));	
-		}
-		hd.startElement("","",XML_ELEMENT_NAME,atts);
-		hd.endElement("","",XML_ELEMENT_NAME);
-	}
-
-}