X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src2%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Frna%2FModeleStrand.java;fp=src2%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Frna%2FModeleStrand.java;h=1af1454f6b15b1f1dd3342ae38ea8560e28550d3;hb=9f55415c9f8005e9dcd8243453883ff853fd5b76;hp=0000000000000000000000000000000000000000;hpb=d8e8c742b864e58406d13e21d124699a26b6492f;p=jalview.git

diff --git a/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java b/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java
new file mode 100644
index 0000000..1af1454
--- /dev/null
+++ b/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java
@@ -0,0 +1,79 @@
+package fr.orsay.lri.varna.models.rna;
+
+import java.util.ArrayList;
+
+public class ModeleStrand {
+	
+	private ArrayList<ModeleBase> _strand = new ArrayList<ModeleBase>();
+	private boolean hasBeenPlaced = false;
+	private boolean strandLeft = false;
+	private boolean strandRight = false;
+	private int levelPosition;
+	
+	public ModeleStrand(){
+		
+	}
+	
+	public void addBase(ModeleBase mb){
+		this._strand.add(mb);
+	}
+	
+	public void addBase(int index, ModeleBase mb){
+		this._strand.add(index, mb);
+	}
+	
+	public int sizeStrand() {
+		return this._strand.size();
+	}
+	
+	public ModeleBase getMB(int a) {	
+		return this._strand.get(a);	
+	}
+	
+	public ArrayList<ModeleBase> getArrayListMB() {	
+		return this._strand;	
+	}
+	
+	public int getLevelPosition(){
+		return this.levelPosition;
+	}
+	
+	public void setLevelPosition(int a){
+		this.levelPosition=a;
+	}
+	
+	public boolean getStrandRight(){
+		return this.strandRight;
+	}
+	
+	public void setStrandRight(boolean bool){
+		this.strandRight=bool;
+	}
+	
+	public boolean getStrandLeft(){
+		return this.strandLeft;
+	}
+	
+	public void setStrandLeft(boolean bool){
+		this.strandLeft=bool;
+	}
+	
+	public boolean hasBeenPlaced(){
+		return this.hasBeenPlaced;
+	}
+	
+	public void setHasBeenPlaced(boolean bool){
+		this.hasBeenPlaced =bool;
+	}
+	
+	public boolean existInStrand(int a){
+		int size =sizeStrand();
+		boolean exist=false; 
+		for (int i=0; i<size;i++){
+			if(a==this.getMB(i).getIndex()){
+				exist=true;
+			}
+		}
+		return exist;
+	}
+}
\ No newline at end of file