X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=srcjar%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Frna%2FModeleBackbone.java;fp=srcjar%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Frna%2FModeleBackbone.java;h=caa4b5ff2468f34096dec4eceeee801be2b40d67;hb=4f30214e8098748469c6a4269ac2ed6c5750e4b0;hp=0000000000000000000000000000000000000000;hpb=9dabc02511e3a334a5749a504f57f69d6c9017bd;p=jalview.git

diff --git a/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackbone.java b/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackbone.java
new file mode 100644
index 0000000..caa4b5f
--- /dev/null
+++ b/srcjar/fr/orsay/lri/varna/models/rna/ModeleBackbone.java
@@ -0,0 +1,75 @@
+package fr.orsay.lri.varna.models.rna;
+
+import java.awt.Color;
+import java.io.Serializable;
+import java.util.ArrayList;
+import java.util.Hashtable;
+
+import javax.xml.transform.sax.TransformerHandler;
+
+import org.xml.sax.SAXException;
+import org.xml.sax.helpers.AttributesImpl;
+
+import fr.orsay.lri.varna.models.rna.ModeleBackboneElement.BackboneType;
+import fr.orsay.lri.varna.utils.XMLUtils;
+
+public class ModeleBackbone  implements Serializable{
+
+	/**
+	 * 
+	 */
+	private Hashtable<Integer,ModeleBackboneElement> elems = new Hashtable<Integer,ModeleBackboneElement>();
+	
+	private static final long serialVersionUID = -614968737102943216L;
+
+	
+	
+	public static String XML_ELEMENT_NAME = "backbone";
+	
+	public void toXML(TransformerHandler hd) throws SAXException
+	{
+		AttributesImpl atts = new AttributesImpl();
+		hd.startElement("","",XML_ELEMENT_NAME,atts);
+		for (ModeleBackboneElement bck:elems.values())
+		{
+			bck.toXML(hd);
+		}
+		hd.endElement("","",XML_ELEMENT_NAME);
+		atts.clear();
+	}
+
+	public void addElement(ModeleBackboneElement mbe)
+	{
+		elems.put(mbe.getIndex(),mbe);
+	}
+
+	 public BackboneType getTypeBefore(int indexBase)
+	 {
+		 return getTypeAfter(indexBase-1);
+	 }
+	
+	 public BackboneType getTypeAfter(int indexBase)
+	 {
+		 if (elems.containsKey(indexBase))
+			 return elems.get(indexBase).getType();
+		 else
+			 return BackboneType.SOLID_TYPE;
+	 }
+
+	 public Color getColorBefore(int indexBase, Color defCol)
+	 {
+		 return getColorAfter(indexBase-1,defCol);
+	 }
+	
+	 public Color getColorAfter(int indexBase, Color defCol)
+	 {
+		 if (elems.containsKey(indexBase))
+		 {
+			 Color c = elems.get(indexBase).getColor();
+			 if (c != null)
+				 return c;
+		 }
+		 return defCol;
+	 }
+	 
+}