X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=srcjar%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Ftemplates%2FRNANodeValueTemplateBasePair.java;fp=srcjar%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Ftemplates%2FRNANodeValueTemplateBasePair.java;h=99c67b581da5ddfd227eaf72407501233ddc271d;hb=4f30214e8098748469c6a4269ac2ed6c5750e4b0;hp=0000000000000000000000000000000000000000;hpb=9dabc02511e3a334a5749a504f57f69d6c9017bd;p=jalview.git

diff --git a/srcjar/fr/orsay/lri/varna/models/templates/RNANodeValueTemplateBasePair.java b/srcjar/fr/orsay/lri/varna/models/templates/RNANodeValueTemplateBasePair.java
new file mode 100644
index 0000000..99c67b5
--- /dev/null
+++ b/srcjar/fr/orsay/lri/varna/models/templates/RNANodeValueTemplateBasePair.java
@@ -0,0 +1,48 @@
+package fr.orsay.lri.varna.models.templates;
+
+import fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix;
+
+
+/**
+ * See RNANodeValueTemplate.
+ * 
+ * @author Raphael Champeimont
+ */
+public class RNANodeValueTemplateBasePair extends RNANodeValueTemplate {
+	
+	/**
+	 * The original template element this node came from.
+	 */
+	private RNATemplateHelix helix;
+
+	/**
+	 * The position (in the 5' to 3' order)
+	 * of this base pair in the original helix.
+	 */
+	private int positionInHelix;
+	
+	
+	
+	public String toGraphvizNodeName() {
+		return "H[" + positionInHelix + "]";
+	}
+	
+	
+	
+	public RNATemplateHelix getHelix() {
+		return helix;
+	}
+
+	public void setHelix(RNATemplateHelix helix) {
+		this.helix = helix;
+	}
+
+	public int getPositionInHelix() {
+		return positionInHelix;
+	}
+
+	public void setPositionInHelix(int positionInHelix) {
+		this.positionInHelix = positionInHelix;
+	}
+	
+}