X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FCrossRefTest.java;fp=test%2Fjalview%2Fanalysis%2FCrossRefTest.java;h=e693a7cf99f38844afc6b01d6448812c976be28e;hb=50caa2bce4379ecdb02a2c0eccc44078487f2f0b;hp=2970e3d886cacdf39512cf90a86248b54c05b6b7;hpb=327e8459a091858b0207ddac4cadd8cb23f4cdeb;p=jalview.git diff --git a/test/jalview/analysis/CrossRefTest.java b/test/jalview/analysis/CrossRefTest.java index 2970e3d..e693a7c 100644 --- a/test/jalview/analysis/CrossRefTest.java +++ b/test/jalview/analysis/CrossRefTest.java @@ -28,6 +28,16 @@ import static org.testng.AssertJUnit.assertNull; import static org.testng.AssertJUnit.assertSame; import static org.testng.AssertJUnit.assertTrue; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; + +import org.testng.annotations.AfterClass; +import org.testng.annotations.BeforeClass; +import org.testng.annotations.BeforeMethod; +import org.testng.annotations.Test; + +import jalview.bin.Cache; import jalview.datamodel.AlignedCodonFrame; import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping; import jalview.datamodel.Alignment; @@ -42,15 +52,6 @@ import jalview.util.DBRefUtils; import jalview.util.MapList; import jalview.ws.SequenceFetcher; import jalview.ws.SequenceFetcherFactory; -import jalview.ws.params.InvalidArgumentException; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; - -import org.testng.annotations.AfterClass; -import org.testng.annotations.BeforeClass; -import org.testng.annotations.Test; public class CrossRefTest { @@ -62,6 +63,12 @@ public class CrossRefTest JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); } + @BeforeMethod(alwaysRun = true) + public void loadProperties() + { + Cache.loadProperties("test/jalview/util/comparisonTestProps.jvprops"); + } + @Test(groups = { "Functional" }) public void testFindXDbRefs() { @@ -187,6 +194,7 @@ public class CrossRefTest AlignmentI al = new Alignment(new SequenceI[] { emblSeq, uniprotSeq }); Alignment xrefs = new CrossRef(new SequenceI[] { emblSeq }, al) .findXrefSequences("UNIPROT", true); + System.err.println("xrefs=" + xrefs); assertEquals(1, xrefs.getHeight()); assertSame(uniprotSeq, xrefs.getSequenceAt(0)); }