X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FGroupingTest.java;fp=test%2Fjalview%2Fanalysis%2FGroupingTest.java;h=d5476313b7c74e477b719c6518067d447e636812;hb=c0501eaa85c0594f9275766f64de8ea44a59c368;hp=184f9fb5968e24651153ff1fc4c42206840a0857;hpb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;p=jalview.git

diff --git a/test/jalview/analysis/GroupingTest.java b/test/jalview/analysis/GroupingTest.java
index 184f9fb..d547631 100644
--- a/test/jalview/analysis/GroupingTest.java
+++ b/test/jalview/analysis/GroupingTest.java
@@ -53,14 +53,17 @@ public class GroupingTest
 
   Sequence s5 = new Sequence("s5", "AAAADDEDTTEE");
 
-  SequenceGroup sg_12 = new SequenceGroup(Arrays.asList(new SequenceI[] {
-      s1, s2 }), "Group1", null, false, false, false, 0, 5);
+  SequenceGroup sg_12 = new SequenceGroup(
+          Arrays.asList(new SequenceI[]
+          { s1, s2 }), "Group1", null, false, false, false, 0, 5);
 
-  SequenceGroup sg_345 = new SequenceGroup(Arrays.asList(new SequenceI[] {
-      s3, s4, s5 }), "Group2", null, false, false, false, 0, 5);
+  SequenceGroup sg_345 = new SequenceGroup(
+          Arrays.asList(new SequenceI[]
+          { s3, s4, s5 }), "Group2", null, false, false, false, 0, 5);
 
   AlignmentI alignment = new Alignment(
-          new SequenceI[] { s1, s2, s3, s4, s5 });
+          new SequenceI[]
+          { s1, s2, s3, s4, s5 });
 
   /*
    * test for the case where column selections are not added in
@@ -84,7 +87,8 @@ public class GroupingTest
     }
     SequenceGroup[] seqgroupsString = Grouping.makeGroupsFrom(
             alignment.getSequencesArray(), str,
-            Arrays.asList(new SequenceGroup[] { sg_12, sg_345 }));
+            Arrays.asList(new SequenceGroup[]
+            { sg_12, sg_345 }));
 
     ColumnSelection cs = new ColumnSelection();
     for (int p : positions)
@@ -93,9 +97,10 @@ public class GroupingTest
     }
     SequenceGroup[] seqgroupsColSel = Grouping.makeGroupsFromCols(
             alignment.getSequencesArray(), cs,
-            Arrays.asList(new SequenceGroup[] { sg_12, sg_345 }));
-    AssertJUnit
-            .assertEquals(seqgroupsString.length, seqgroupsColSel.length);
+            Arrays.asList(new SequenceGroup[]
+            { sg_12, sg_345 }));
+    AssertJUnit.assertEquals(seqgroupsString.length,
+            seqgroupsColSel.length);
     for (int p = 0; p < seqgroupsString.length; p++)
     {
       AssertJUnit.assertEquals(seqgroupsString[p].getName(),