X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FRnaTest.java;fp=test%2Fjalview%2Fanalysis%2FRnaTest.java;h=a8e03afb8055a080d9b901f972032f1ae09fa1e9;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=cc35976ba18ffef4a0d0030997da5e4ec5bd31e2;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git diff --git a/test/jalview/analysis/RnaTest.java b/test/jalview/analysis/RnaTest.java index cc35976..a8e03af 100644 --- a/test/jalview/analysis/RnaTest.java +++ b/test/jalview/analysis/RnaTest.java @@ -155,8 +155,8 @@ public class RnaTest for (int i = 0; i <= 255; i++) { boolean isClosingChar = Rna.isClosingParenthesis((char) i); - boolean isClosingString = Rna.isClosingParenthesis(String - .valueOf((char) i)); + boolean isClosingString = Rna + .isClosingParenthesis(String.valueOf((char) i)); if ((i >= 'a' && i <= 'z') || i == ')' || i == '}' || i == ']' || i == '>') { @@ -166,7 +166,8 @@ public class RnaTest else { assertFalse(String.format("close base pair %c", i), isClosingChar); - assertFalse(String.format("close base pair %c", i), isClosingString); + assertFalse(String.format("close base pair %c", i), + isClosingString); } assertFalse(Rna.isClosingParenthesis(String.valueOf((char) i) + " ")); } @@ -240,8 +241,8 @@ public class RnaTest for (int i = 0; i <= 255; i++) { boolean isOpeningChar = Rna.isOpeningParenthesis((char) i); - boolean isOpeningString = Rna.isOpeningParenthesis(String - .valueOf((char) i)); + boolean isOpeningString = Rna + .isOpeningParenthesis(String.valueOf((char) i)); if ((i >= 'A' && i <= 'Z') || i == '(' || i == '{' || i == '[' || i == '<') { @@ -298,8 +299,8 @@ public class RnaTest for (int i = 0; i <= 255; i++) { boolean isValidChar = Rna.isRnaSecondaryStructureSymbol((char) i); - boolean isValidString = Rna.isRnaSecondaryStructureSymbol(String - .valueOf((char) i)); + boolean isValidString = Rna + .isRnaSecondaryStructureSymbol(String.valueOf((char) i)); if ((i >= 'A' && i <= 'Z') || (i >= 'a' && i <= 'z') || i == '(' || i == ')' || i == '{' || i == '}' || i == '[' || i == ']' || i == '<' || i == '>') @@ -312,8 +313,8 @@ public class RnaTest assertFalse(String.format("close base pair %c", i), isValidChar); assertFalse(String.format("close base pair %c", i), isValidString); } - assertFalse(Rna.isRnaSecondaryStructureSymbol(String - .valueOf((char) i) + " ")); + assertFalse(Rna.isRnaSecondaryStructureSymbol( + String.valueOf((char) i) + " ")); } } @@ -348,7 +349,7 @@ public class RnaTest String rna = ".([.)]..{.<}.>"; SequenceFeature[] sfs = Rna.getHelixMap(rna); assertEquals(4, sfs.length); - + /* * pairs are added in the order in which the closing bracket is found * (see testGetSimpleBPs)