X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2Fscoremodels%2FFeatureScoreModelTest.java;fp=test%2Fjalview%2Fanalysis%2Fscoremodels%2FFeatureScoreModelTest.java;h=b40382dd7cd95b5329d7b884bcbe734d1f2c9c27;hb=3412b273e964fb1a9d22564b04a5f0c827ec2461;hp=1dbaa4ab70dff5122e4a5806d57920974ff184fe;hpb=4bba61a3c701f83bdcb6707c4d9f17a1f5faaa04;p=jalview.git diff --git a/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java b/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java index 1dbaa4a..b40382d 100644 --- a/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java +++ b/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java @@ -1,5 +1,7 @@ package jalview.analysis.scoremodels; +import org.testng.annotations.Test; +import org.testng.AssertJUnit; import jalview.datamodel.AlignmentI; import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceI; @@ -7,9 +9,6 @@ import jalview.gui.AlignFrame; import jalview.io.FileLoader; import jalview.io.FormatAdapter; -import org.junit.Assert; -import org.junit.Test; - public class FeatureScoreModelTest { public static String alntestFile = "FER1_MESCR/72-76 DVYIL\nFER1_SPIOL/71-75 DVYIL\nFER3_RAPSA/21-25 DVYVL\nFER1_MAIZE/73-77 DVYIL\n"; @@ -29,8 +28,8 @@ public class FeatureScoreModelTest AlignFrame alf = new FileLoader(false).LoadFileWaitTillLoaded(alntestFile, FormatAdapter.PASTE); AlignmentI al = alf.getViewport().getAlignment(); - Assert.assertEquals(4, al.getHeight()); - Assert.assertEquals(5, al.getWidth()); + AssertJUnit.assertEquals(4, al.getHeight()); + AssertJUnit.assertEquals(5, al.getWidth()); for (int i = 0; i < 4; i++) { SequenceI ds = al.getSequenceAt(i).getDatasetSequence(); @@ -55,18 +54,18 @@ public class FeatureScoreModelTest alf.getFeatureRenderer().setVisible("sf2"); alf.getFeatureRenderer().setVisible("sf3"); alf.getFeatureRenderer().findAllFeatures(true); - Assert.assertEquals("Number of feature types", 3, alf + AssertJUnit.assertEquals("Number of feature types", 3, alf .getFeatureRenderer().getDisplayedFeatureTypes().length); - Assert.assertTrue(alf.getCurrentView().areFeaturesDisplayed()); + AssertJUnit.assertTrue(alf.getCurrentView().areFeaturesDisplayed()); FeatureScoreModel fsm = new FeatureScoreModel(); - Assert.assertTrue(fsm.configureFromAlignmentView(alf.getCurrentView() + AssertJUnit.assertTrue(fsm.configureFromAlignmentView(alf.getCurrentView() .getAlignPanel())); alf.selectAllSequenceMenuItem_actionPerformed(null); float[][] dm = fsm.findDistances(alf.getViewport().getAlignmentView( true)); - Assert.assertTrue("FER1_MESCR should be identical with RAPSA (2)", + AssertJUnit.assertTrue("FER1_MESCR should be identical with RAPSA (2)", dm[0][2] == 0f); - Assert.assertTrue( + AssertJUnit.assertTrue( "FER1_MESCR should be further from SPIOL (1) than it is from RAPSA (2)", dm[0][1] > dm[0][2]);