X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2Fscoremodels%2FFeatureScoreModelTest.java;h=309790fe71f117428bdf1dee12358a51e4f54e42;hb=528c0f1815bc67b54618ad5b16c2162946974caf;hp=029483f34ea4b28ba0fe09071ed0b0f126ff4558;hpb=2cef2c13e720e889304333e70f893a23d1a98f42;p=jalview.git diff --git a/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java b/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java index 029483f..309790f 100644 --- a/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java +++ b/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java @@ -82,8 +82,8 @@ public class FeatureScoreModelTest { AlignFrame alf = getTestAlignmentFrame(); FeatureScoreModel fsm = new FeatureScoreModel(); - Assert.assertTrue(fsm.configureFromAlignmentView(alf - .getCurrentView().getAlignPanel())); + Assert.assertTrue(fsm.configureFromAlignmentView(alf.getCurrentView() + .getAlignPanel())); alf.selectAllSequenceMenuItem_actionPerformed(null); float[][] dm = fsm.findDistances(alf.getViewport().getAlignmentView( true)); @@ -124,11 +124,13 @@ public class FeatureScoreModelTest alf.selectAllSequenceMenuItem_actionPerformed(null); float[][] dm = fsm.findDistances(alf.getViewport().getAlignmentView( true)); - Assert.assertTrue(dm[0][2] == 0f, + Assert.assertTrue( + dm[0][2] == 0f, "After hiding last two columns FER1_MESCR (0) should still be identical with RAPSA (2)"); - Assert.assertTrue(dm[0][1] == 0f, + Assert.assertTrue( + dm[0][1] == 0f, "After hiding last two columns FER1_MESCR (0) should now also be identical with SPIOL (1)"); - for (int s=0;s<3;s++) + for (int s = 0; s < 3; s++) { Assert.assertTrue(dm[s][3] > 0f, "After hiding last two columns " + alf.getViewport().getAlignment().getSequenceAt(s).getName()