X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FAlignmentAnnotationTests.java;fp=test%2Fjalview%2Fdatamodel%2FAlignmentAnnotationTests.java;h=a2c62568c22afac1768c8c95ffcaa7ead0860214;hb=2595e9d4ee0dbbd3406a98c4e49a61ccde806479;hp=1aff519120f7793fba27fbc469028cf075f30f7b;hpb=e20075ba805d744d7cc4976e2b8d5e5840fb0a8d;p=jalview.git

diff --git a/test/jalview/datamodel/AlignmentAnnotationTests.java b/test/jalview/datamodel/AlignmentAnnotationTests.java
index 1aff519..a2c6256 100644
--- a/test/jalview/datamodel/AlignmentAnnotationTests.java
+++ b/test/jalview/datamodel/AlignmentAnnotationTests.java
@@ -24,12 +24,23 @@ import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertNull;
 
 import jalview.analysis.AlignSeq;
+import jalview.gui.JvOptionPane;
 import jalview.io.AppletFormatAdapter;
+import jalview.io.FileFormat;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 public class AlignmentAnnotationTests
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   @Test(groups = { "Functional" })
   public void testCopyConstructor()
   {
@@ -119,7 +130,8 @@ public class AlignmentAnnotationTests
     alSeq2.setEnd(sqTo.getStart() + align.getSeq2End() - 1);
     alSeq2.setDatasetSequence(sqTo);
     System.out.println(new AppletFormatAdapter()
-            .formatSequences("STH", new Alignment(new SequenceI[] { sqFrom,
+.formatSequences(
+            FileFormat.Stockholm, new Alignment(new SequenceI[] { sqFrom,
                 alSeq1, sqTo, alSeq2 }), true));
 
     Mapping mp = align.getMappingFromS1(false);
@@ -143,7 +155,8 @@ public class AlignmentAnnotationTests
     AlignmentI all = new Alignment(new SequenceI[] { alSeq1, alSeq2 });
     all.addAnnotation(almap1);
     all.addAnnotation(almap2);
-    System.out.println(new AppletFormatAdapter().formatSequences("STH",
+    System.out.println(new AppletFormatAdapter().formatSequences(
+            FileFormat.Stockholm,
             all, true));
 
     for (int p = 0; p < alSeq1.getLength(); p++)
@@ -280,4 +293,4 @@ public class AlignmentAnnotationTests
               ann.getDefaultRnaHelixSymbol(i));
     }
   }
-}
\ No newline at end of file
+}