X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FAlignmentTest.java;fp=test%2Fjalview%2Fdatamodel%2FAlignmentTest.java;h=06be9827351abb9fa78eb8db379551f2d2f1bbbd;hb=391467e57959e2c71a5051de06da2028dc07f2ba;hp=4b1f7e98dbe2345e9512bb8e2a0e0b2f633f5988;hpb=a059dd46fe149a476bd274562cd27b2dc7d390dd;p=jalview.git

diff --git a/test/jalview/datamodel/AlignmentTest.java b/test/jalview/datamodel/AlignmentTest.java
index 4b1f7e9..06be982 100644
--- a/test/jalview/datamodel/AlignmentTest.java
+++ b/test/jalview/datamodel/AlignmentTest.java
@@ -1578,4 +1578,17 @@ public class AlignmentTest
     a.getHiddenColumns().hideColumns(2, 5);
     assertEquals(5, a.getVisibleWidth());
   }
+
+  @Test(groups = { "Functional" })
+  public void testGetContactMap()
+  {
+    // TODO
+    // 1. test adding/removing/manipulating contact maps with/without associated
+    // sequence(s) or groups
+    // 2. For sequence associated - ensure that inserting a gap in sequence
+    // results in the contact map being relocated accordingly
+    // 3. RENDERER QUESTION - should contact maps reflect gaps in the alignment
+    // ?
+
+  }
 }