X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FAlignmentViewTest.java;fp=test%2Fjalview%2Fdatamodel%2FAlignmentViewTest.java;h=b201c7eb1f19cd9f4cbe9055a10c5328d1c0ff24;hb=d54f8d3b0bf910b99991441485fd5d42acf1df7d;hp=594d6e6adb800c8372646306128620bc227e19f1;hpb=27b32113c6ffa2f60392633eb9f69de96f40d2d5;p=jalview.git

diff --git a/test/jalview/datamodel/AlignmentViewTest.java b/test/jalview/datamodel/AlignmentViewTest.java
index 594d6e6..b201c7e 100644
--- a/test/jalview/datamodel/AlignmentViewTest.java
+++ b/test/jalview/datamodel/AlignmentViewTest.java
@@ -22,7 +22,11 @@ package jalview.datamodel;
 
 import static org.testng.Assert.assertEquals;
 
+import jalview.gui.AlignFrame;
+import jalview.gui.AlignViewport;
 import jalview.gui.JvOptionPane;
+import jalview.io.DataSourceType;
+import jalview.io.FileLoader;
 
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
@@ -50,4 +54,69 @@ public class AlignmentViewTest
     assertEquals(av.getVisibleAlignment('$').getSequenceAt(0)
             .getSequenceAsString(), "A$$CDE");
   }
+
+  @Test(groups = { "Functional" })
+  public void testGetVisibleContigs()
+  {
+    AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
+            ">s1\n0123456789\n", DataSourceType.PASTE);
+    AlignViewport av = af.getViewport();
+    AlignmentView view = av.getAlignmentView(true);
+
+    /*
+     * verify getVisibleContigs returns inclusive [start, end] ranges
+     * 
+     * no columns hidden
+     */
+    int[] contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] { 0, 9 });
+
+    /*
+     * hide 3 internal columns
+     */
+    av.hideColumns(5, 7);
+    // the old AlignmentView is now stale!
+    contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] { 0, 9 });
+    // get a fresh AlignmentView
+    view = av.getAlignmentView(true);
+    contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] { 0, 4, 8, 9 });
+
+    // hide first 2 columns
+    av.hideColumns(0, 1);
+    view = av.getAlignmentView(true);
+    contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] { 2, 4, 8, 9 });
+
+    // hide last column
+    av.hideColumns(9, 9);
+    view = av.getAlignmentView(true);
+    contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] { 2, 4, 8, 8 });
+
+    // unhide columns 5-7
+    av.showColumn(5);
+    view = av.getAlignmentView(true);
+    contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] { 2, 8 });
+
+    // hide columns 2-7
+    av.hideColumns(2, 7);
+    view = av.getAlignmentView(true);
+    contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] { 8, 8 });
+
+    // hide column 8
+    av.hideColumns(8, 8);
+    view = av.getAlignmentView(true);
+    contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] {});
+
+    // unhide all
+    av.showAllHiddenColumns();
+    view = av.getAlignmentView(true);
+    contigs = view.getVisibleContigs();
+    assertEquals(contigs, new int[] { 0, 9 });
+  }
 }