X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FMappedFeaturesTest.java;fp=test%2Fjalview%2Fdatamodel%2FMappedFeaturesTest.java;h=06fb303408371bae2d59e30129d1318a10cc6ab4;hb=62c6e630bd24574d279417dd6b4ee921b5537131;hp=5d00089205fa8d622d015be2751f3f186b696f0b;hpb=881dd37ce1077bce230b6b04690112d9d6eafecd;p=jalview.git

diff --git a/test/jalview/datamodel/MappedFeaturesTest.java b/test/jalview/datamodel/MappedFeaturesTest.java
index 5d00089..06fb303 100644
--- a/test/jalview/datamodel/MappedFeaturesTest.java
+++ b/test/jalview/datamodel/MappedFeaturesTest.java
@@ -143,13 +143,20 @@ public class MappedFeaturesTest
     assertEquals(pepPos[1], 2);
     
     /*
-     * scenario: exon feature on CDS including stop codon;
+     * scenario: CDS feature on CDS including stop codon;
      */
     pepPos = mf.getMappedPositions(10, 21);
     assertEquals(pepPos[0], 1);
     assertEquals(pepPos[1], 3);
     
     /*
+     * scenario: exon feature on CDS extending beyond start and stop codons
+     */
+    pepPos = mf.getMappedPositions(2, 222);
+    assertEquals(pepPos[0], 1);
+    assertEquals(pepPos[1], 3);
+    
+    /*
      * now with the mapping from protein to CDS
      */
     mapping = new Mapping(cds, map.getInverse());