X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FMappedFeaturesTest.java;fp=test%2Fjalview%2Fdatamodel%2FMappedFeaturesTest.java;h=f549ff4d2d467f259b2a38a8e5e9c296b52e672b;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=de4ce6cb49f5ec8437ab99d23a636588215ac4c2;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git diff --git a/test/jalview/datamodel/MappedFeaturesTest.java b/test/jalview/datamodel/MappedFeaturesTest.java index de4ce6c..f549ff4 100644 --- a/test/jalview/datamodel/MappedFeaturesTest.java +++ b/test/jalview/datamodel/MappedFeaturesTest.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.datamodel; import static org.testng.Assert.assertEquals; @@ -34,8 +54,8 @@ public class MappedFeaturesTest * T>C at dna13, consequence CGT>CGC synonymous */ List features = new ArrayList<>(); - SequenceFeature sf1 = new SequenceFeature("sequence_variant", "C,T", - 11, 11, null); + SequenceFeature sf1 = new SequenceFeature("sequence_variant", "C,T", 11, + 11, null); sf1.setValue("alleles", "C,T"); features.add(sf1); SequenceFeature sf2 = new SequenceFeature("sequence_variant", "T,C", 13, @@ -46,8 +66,7 @@ public class MappedFeaturesTest /* * missense variant in first codon */ - MappedFeatures mf = new MappedFeatures(mapping, from, 1, 'R', - features); + MappedFeatures mf = new MappedFeatures(mapping, from, 1, 'R', features); String variant = mf.findProteinVariants(sf1); assertEquals(variant, "p.Arg1Cys");