X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fensembl%2FEnsemblGenomeTest.java;fp=test%2Fjalview%2Fext%2Fensembl%2FEnsemblGenomeTest.java;h=0652dd6a872bfa499ad47cadc34bf397aab500a7;hb=afbff636fa2dfa01daa1f4ec4e8a936e61e3cf16;hp=11140f9f86eaddbe668e2b739397bbb2fcf1c6dd;hpb=c6df3928336440918d23b4e7cb579f134e2f48dd;p=jalview.git

diff --git a/test/jalview/ext/ensembl/EnsemblGenomeTest.java b/test/jalview/ext/ensembl/EnsemblGenomeTest.java
index 11140f9..0652dd6 100644
--- a/test/jalview/ext/ensembl/EnsemblGenomeTest.java
+++ b/test/jalview/ext/ensembl/EnsemblGenomeTest.java
@@ -75,8 +75,8 @@ public class EnsemblGenomeTest
     String transcriptId = "ABC123";
 
     // transcript at (start+10000) length 501
-    SequenceFeature sf = new SequenceFeature("transcript", "", 20000,
-            20500, 0f, null);
+    SequenceFeature sf = new SequenceFeature("transcript", "", 20000, 20500,
+            0f, null);
     sf.setValue("id", transcriptId);
     sf.setStrand("+");
     genomic.addSequenceFeature(sf);
@@ -89,8 +89,8 @@ public class EnsemblGenomeTest
 
     // Ensembl treats NMD_transcript_variant as if transcript
     // although strictly it is a sequence_variant in SO
-    sf = new SequenceFeature("NMD_transcript_variant", "", 11000, 12000,
-            0f, null);
+    sf = new SequenceFeature("NMD_transcript_variant", "", 11000, 12000, 0f,
+            null);
     sf.setValue("id", transcriptId);
     sf.setStrand("+");
     genomic.addSequenceFeature(sf);
@@ -133,16 +133,16 @@ public class EnsemblGenomeTest
     String accId = "ABC123";
     EnsemblGenome testee = new EnsemblGenome();
 
-    SequenceFeature sf = new SequenceFeature("transcript", "", 20000,
-            20500, 0f, null);
+    SequenceFeature sf = new SequenceFeature("transcript", "", 20000, 20500,
+            0f, null);
     assertFalse(testee.retainFeature(sf, accId));
 
     sf = new SequenceFeature("mature_transcript", "", 20000, 20500, 0f,
             null);
     assertFalse(testee.retainFeature(sf, accId));
 
-    sf = new SequenceFeature("NMD_transcript_variant", "", 20000, 20500,
-            0f, null);
+    sf = new SequenceFeature("NMD_transcript_variant", "", 20000, 20500, 0f,
+            null);
     assertFalse(testee.retainFeature(sf, accId));
 
     // other feature with no parent is kept