X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fjmol%2FJmolCommandsTest.java;fp=test%2Fjalview%2Fext%2Fjmol%2FJmolCommandsTest.java;h=968460335741cd431d1d80e941e4d8c4c1163003;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=6265c0529df7f56c233c85107d3f89a54cabf5ae;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git

diff --git a/test/jalview/ext/jmol/JmolCommandsTest.java b/test/jalview/ext/jmol/JmolCommandsTest.java
index 6265c05..9684603 100644
--- a/test/jalview/ext/jmol/JmolCommandsTest.java
+++ b/test/jalview/ext/jmol/JmolCommandsTest.java
@@ -94,9 +94,8 @@ public class JmolCommandsTest
             "B", map, null);
     ssm.addStructureMapping(sm2);
 
-    String[] commands = testee.colourBySequence(ssm,
-            files,
-            seqs, sr, af.alignPanel);
+    String[] commands = testee.colourBySequence(ssm, files, seqs, sr,
+            af.alignPanel);
     assertEquals(commands.length, 2);
 
     String chainACommand = commands[0];
@@ -133,9 +132,11 @@ public class JmolCommandsTest
     AtomSpecModel model = new AtomSpecModel();
     assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY), "");
     model.addRange("1", 2, 4, "A");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY), "2-4:A/1.1");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY),
+            "2-4:A/1.1");
     model.addRange("1", 8, 8, "A");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY), "2-4:A/1.1|8:A/1.1");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY),
+            "2-4:A/1.1|8:A/1.1");
     model.addRange("1", 5, 7, "B");
     assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY),
             "2-4:A/1.1|8:A/1.1|5-7:B/1.1");
@@ -200,7 +201,8 @@ public class JmolCommandsTest
     toAlign.addRange("2", 20, 21, "B");
     toAlign.addRange("2", 22, 22, "C");
     List<StructureCommandI> command = testee.superposeStructures(ref,
-            toAlign, AtomSpecType.ALPHA); // doesn't matter for Jmol whether nuc or protein
+            toAlign, AtomSpecType.ALPHA); // doesn't matter for Jmol whether nuc
+                                          // or protein
     assertEquals(command.size(), 1);
     String refSpec = "12-14:A/1.1|18:B/1.1|22-23:B/1.1";
     String toAlignSpec = "15-17:B/2.1|20-21:B/2.1|22:C/2.1";