X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;fp=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;h=a7c439f7cbdc3d7736d2d9afafb49cf66753670f;hb=b8810711642d8473325c8a3d3e76cc5c3c9b5bbd;hp=d2322ef65d84eeff7425475c5e6a7651ced85211;hpb=936d4dc095734df2b1e9f3bf9e0bd29b9c86434c;p=jalview.git

diff --git a/test/jalview/ext/paradise/TestAnnotate3D.java b/test/jalview/ext/paradise/TestAnnotate3D.java
index d2322ef..a7c439f 100644
--- a/test/jalview/ext/paradise/TestAnnotate3D.java
+++ b/test/jalview/ext/paradise/TestAnnotate3D.java
@@ -21,10 +21,8 @@
 package jalview.ext.paradise;
 
 import static org.junit.Assert.assertTrue;
-
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
-import jalview.ext.paradise.Annotate3D;
 import jalview.io.FastaFile;
 import jalview.io.FormatAdapter;
 
@@ -72,9 +70,13 @@ public class TestAnnotate3D
         iline = id.readLine();
         fline = file.readLine();
         if (iline != null)
+        {
           System.out.println(iline);
+        }
         if (fline != null)
+        {
           System.out.println(fline);
+        }
         // next assert fails for latest RNAview - because the XMLID entries
         // change between file and ID based RNAML generation.
         assertTrue(
@@ -96,7 +98,8 @@ public class TestAnnotate3D
   @Test
   public void testPDBfileVsRNAML() throws Exception
   {
-    PDBfile pdbf = new PDBfile(true,true,"examples/2GIS.pdb", FormatAdapter.FILE);
+    PDBfile pdbf = new PDBfile(true, false, true, "examples/2GIS.pdb",
+            FormatAdapter.FILE);
     Assert.assertTrue(pdbf.isValid());
     // Comment - should add new FileParse constructor like new FileParse(Reader
     // ..). for direct reading