X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignViewportTest.java;fp=test%2Fjalview%2Fgui%2FAlignViewportTest.java;h=891a203fc1ce6fd904075afc5b05099bd7114271;hb=fcb944cdd9de849c89f0a8744ae6e56e22de9c1e;hp=3ba93bc4f7ac37c463488fb70117f50e71f98ca8;hpb=cc75fb7e201de35734cd3f1f5f8020b971ebdd92;p=jalview.git

diff --git a/test/jalview/gui/AlignViewportTest.java b/test/jalview/gui/AlignViewportTest.java
index 3ba93bc..891a203 100644
--- a/test/jalview/gui/AlignViewportTest.java
+++ b/test/jalview/gui/AlignViewportTest.java
@@ -274,7 +274,7 @@ public class AlignViewportTest
    * Test for JAL-1306 - conservation thread should run even when only Quality
    * (and not Conservation) is enabled in Preferences
    */
-  @Test(groups = { "Functional" }, timeOut = 2000) // BH removed timeOut=2000
+  @Test(groups = { "Functional" }, timeOut = 2000)
   public void testUpdateConservation_qualityOnly()
   {
     Cache.setPropertyNoSave("SHOW_ANNOTATIONS",
@@ -296,8 +296,8 @@ public class AlignViewportTest
     AlignViewport viewport = af.getViewport();
     synchronized (this)
     {
-      System.out.println("AVT consv: "
-              + viewport.getAlignmentConservationAnnotation());
+      // System.out.println("AVT consv: "
+      // + viewport.getAlignmentConservationAnnotation());
       try
       {
         wait(250); // BH increased from 50 -- was getting Quality in column 1
@@ -305,8 +305,8 @@ public class AlignViewportTest
       } catch (InterruptedException e)
       {
       }
-      System.out.println("AVT consv: "
-              + viewport.getAlignmentConservationAnnotation());
+      // System.out.println("AVT consv: "
+      // + viewport.getAlignmentConservationAnnotation());
       while (viewport.getAlignmentConservationAnnotation() != null)
       {
         try
@@ -488,7 +488,7 @@ public class AlignViewportTest
     // af.paintImmediately(af.getBounds());
     AlignViewport testme = af.getViewport();
     SequenceI cons = testme.getConsensusSeq();
-    System.out.println("AVT " + cons.getSequenceAsString());
+    // System.out.println("AVT " + cons.getSequenceAsString());
     assertEquals("A-C", cons.getSequenceAsString());
   }