X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAnnotationLabelsTest.java;fp=test%2Fjalview%2Fgui%2FAnnotationLabelsTest.java;h=0000000000000000000000000000000000000000;hb=4f77328104498504339216829abf5ea87e2791ec;hp=616a1a6263a8ffff5ab1c9eb5deb3b255518a1e9;hpb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;p=jalview.git
diff --git a/test/jalview/gui/AnnotationLabelsTest.java b/test/jalview/gui/AnnotationLabelsTest.java
deleted file mode 100644
index 616a1a6..0000000
--- a/test/jalview/gui/AnnotationLabelsTest.java
+++ /dev/null
@@ -1,153 +0,0 @@
-package jalview.gui;
-
-import static org.testng.Assert.assertEquals;
-import static org.testng.Assert.assertNull;
-
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.Sequence;
-
-import org.testng.annotations.Test;
-
-public class AnnotationLabelsTest
-{
- @Test(groups = "Functional")
- public void testGetTooltip()
- {
- assertNull(AnnotationLabels.getTooltip(null));
-
- /*
- * simple description only
- */
- AlignmentAnnotation ann = new AlignmentAnnotation("thelabel", "thedesc",
- null);
- String expected = "thedesc";
- assertEquals(AnnotationLabels.getTooltip(ann), expected);
-
- /*
- * description needing html encoding
- * (no idea why '<' is encoded but '>' is not)
- */
- ann.description = "TCoffee scores < 56 and > 28";
- expected = "TCoffee scores < 56 and > 28";
- assertEquals(AnnotationLabels.getTooltip(ann), expected);
-
- /*
- * description already html formatted
- */
- ann.description = "hello world";
- assertEquals(AnnotationLabels.getTooltip(ann), ann.description);
-
- /*
- * simple description and score
- */
- ann.description = "hello world";
- ann.setScore(2.34d);
- expected = "hello world
Score: 2.34";
- assertEquals(AnnotationLabels.getTooltip(ann), expected);
-
- /*
- * html description and score
- */
- ann.description = "hello world";
- ann.setScore(2.34d);
- expected = "hello world
Score: 2.34";
- assertEquals(AnnotationLabels.getTooltip(ann), expected);
-
- /*
- * score, no description
- */
- ann.description = " ";
- assertEquals(AnnotationLabels.getTooltip(ann),
- " Score: 2.34");
- ann.description = null;
- assertEquals(AnnotationLabels.getTooltip(ann),
- " Score: 2.34");
-
- /*
- * sequenceref, simple description
- */
- ann.description = "Count < 12";
- ann.sequenceRef = new Sequence("Seq1", "MLRIQST");
- ann.hasScore = false;
- ann.score = Double.NaN;
- expected = "Seq1 : Count < 12";
- assertEquals(AnnotationLabels.getTooltip(ann), expected);
-
- /*
- * sequenceref, html description, score
- */
- ann.description = "Score < 4.8";
- ann.sequenceRef = new Sequence("Seq1", "MLRIQST");
- ann.setScore(-2.1D);
- expected = "Seq1 : Score < 4.8
Score: -2.1";
- assertEquals(AnnotationLabels.getTooltip(ann), expected);
-
- /*
- * no score, null description
- */
- ann.description = null;
- ann.hasScore = false;
- ann.score = Double.NaN;
- assertNull(AnnotationLabels.getTooltip(ann));
-
- /*
- * no score, empty description, sequenceRef
- */
- ann.description = "";
- assertEquals(AnnotationLabels.getTooltip(ann), "Seq1 :");
-
- /*
- * no score, empty description, no sequenceRef
- */
- ann.sequenceRef = null;
- assertNull(AnnotationLabels.getTooltip(ann));
- }
-
- @Test(groups = "Functional")
- public void testGetStatusMessage()
- {
- assertNull(AnnotationLabels.getStatusMessage(null, null));
-
- /*
- * simple label
- */
- AlignmentAnnotation aa = new AlignmentAnnotation("IUPredWS Short",
- "Protein disorder", null);
- assertEquals(AnnotationLabels.getStatusMessage(aa, null),
- "IUPredWS Short");
-
- /*
- * with sequence ref
- */
- aa.setSequenceRef(new Sequence("FER_CAPAA", "MIGRKQL"));
- assertEquals(AnnotationLabels.getStatusMessage(aa, null),
- "FER_CAPAA : IUPredWS Short");
-
- /*
- * with graph group (degenerate, one annotation only)
- */
- aa.graphGroup = 1;
- AlignmentAnnotation aa2 = new AlignmentAnnotation("IUPredWS Long",
- "Protein disorder", null);
- assertEquals(
- AnnotationLabels.getStatusMessage(aa, new AlignmentAnnotation[]
- { aa, aa2 }), "FER_CAPAA : IUPredWS Short");
-
- /*
- * graph group with two members; note labels are appended in
- * reverse order (matching rendering order on screen)
- */
- aa2.graphGroup = 1;
- assertEquals(
- AnnotationLabels.getStatusMessage(aa, new AlignmentAnnotation[]
- { aa, aa2 }), "FER_CAPAA : IUPredWS Long, IUPredWS Short");
-
- /*
- * graph group with no sequence ref
- */
- aa.sequenceRef = null;
- assertEquals(
- AnnotationLabels.getStatusMessage(aa, new AlignmentAnnotation[]
- { aa, aa2 }), "IUPredWS Long, IUPredWS Short");
- }
-}