X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FSequenceRendererTest.java;fp=test%2Fjalview%2Fgui%2FSequenceRendererTest.java;h=0000000000000000000000000000000000000000;hb=4f77328104498504339216829abf5ea87e2791ec;hp=359377aced9097432fb309eff1a0d947525fbedb;hpb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;p=jalview.git diff --git a/test/jalview/gui/SequenceRendererTest.java b/test/jalview/gui/SequenceRendererTest.java deleted file mode 100644 index 359377a..0000000 --- a/test/jalview/gui/SequenceRendererTest.java +++ /dev/null @@ -1,89 +0,0 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) - * Copyright (C) $$Year-Rel$$ The Jalview Authors - * - * This file is part of Jalview. - * - * Jalview is free software: you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 - * of the License, or (at your option) any later version. - * - * Jalview is distributed in the hope that it will be useful, but - * WITHOUT ANY WARRANTY; without even the implied warranty - * of MERCHANTABILITY or FITNESS FOR A PARTICULAR - * PURPOSE. See the GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with Jalview. If not, see . - * The Jalview Authors are detailed in the 'AUTHORS' file. - */ -package jalview.gui; - -import static org.testng.Assert.assertEquals; - -import jalview.bin.Jalview; -import jalview.datamodel.Alignment; -import jalview.datamodel.AlignmentI; -import jalview.datamodel.Sequence; -import jalview.datamodel.SequenceGroup; -import jalview.datamodel.SequenceI; -import jalview.renderer.ResidueShader; -import jalview.renderer.ResidueShaderI; -import jalview.schemes.ZappoColourScheme; - -import java.awt.Color; - -import org.testng.annotations.BeforeClass; -import org.testng.annotations.BeforeMethod; -import org.testng.annotations.Test; - -public class SequenceRendererTest -{ - AlignmentI al; - AlignViewport av; - - SequenceI seq1; - - @BeforeClass(alwaysRun = true) - public static void setUpBeforeClass() throws Exception - { - Jalview.main( - new String[] - { "-nonews", "-props", "test/jalview/testProps.jvprops" }); - } - - @BeforeMethod(alwaysRun = true) - public void setUp() - { - seq1 = new Sequence("Seq1", "ABCEEEABCABC"); - SequenceI seq2 = new Sequence("Seq2", "ABCABCABCABC"); - SequenceI seq3 = new Sequence("Seq3", "ABCABCABCABC"); - SequenceI[] seqs = new SequenceI[] { seq1, seq2, seq3 }; - al = new Alignment(seqs); - al.setDataset(null); - av = new AlignViewport(al); - } - - @Test(groups = "Functional") - public void testGetResidueColour_WithGroup() - { - SequenceRenderer sr = new SequenceRenderer(av); - SequenceGroup sg = new SequenceGroup(); - sg.addSequence(seq1, false); - sg.setStartRes(3); - sg.setEndRes(5); - - ResidueShaderI rs = new ResidueShader(); - rs.setColourScheme(new ZappoColourScheme()); - sg.setGroupColourScheme(rs); - - av.getAlignment().addGroup(sg); - - // outside group residues are white - assertEquals(Color.white, sr.getResidueColour(seq1, 1, null)); - - // within group use Zappo scheme - E = red - assertEquals(Color.red, sr.getResidueColour(seq1, 3, null)); - } -}