X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FAnnotatedPDBFileInputTest.java;h=689bd59b014b1fbe2bc49cbcce985ac53b5675f0;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=8eb37968f39d1912d8b860577a125378ae46c6de;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git

diff --git a/test/jalview/io/AnnotatedPDBFileInputTest.java b/test/jalview/io/AnnotatedPDBFileInputTest.java
index 8eb3796..689bd59 100644
--- a/test/jalview/io/AnnotatedPDBFileInputTest.java
+++ b/test/jalview/io/AnnotatedPDBFileInputTest.java
@@ -182,10 +182,9 @@ public class AnnotatedPDBFileInputTest
             break;
           }
         }
-        assertTrue(
-                "Couldn't find sequence associated annotation "
-                        + aa.label
-                        + " on the sequence it is associated with.\nSequence associated editing will fail.",
+        assertTrue("Couldn't find sequence associated annotation "
+                + aa.label
+                + " on the sequence it is associated with.\nSequence associated editing will fail.",
                 found);
       }
     }
@@ -197,8 +196,9 @@ public class AnnotatedPDBFileInputTest
   @BeforeClass(alwaysRun = true)
   public static void setUpBeforeClass() throws Exception
   {
-    jalview.bin.Jalview.main(new String[] { "-props",
-        "test/jalview/io/testProps.jvprops" });
+    jalview.bin.Jalview
+            .main(new String[]
+            { "-props", "test/jalview/io/testProps.jvprops" });
   }
 
   /**
@@ -218,8 +218,8 @@ public class AnnotatedPDBFileInputTest
     String inFile = "examples/1gaq.txt";
     String tfile = File.createTempFile("JalviewTest", ".jvp")
             .getAbsolutePath();
-    AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(
-            inFile, DataSourceType.FILE);
+    AlignFrame af = new jalview.io.FileLoader()
+            .LoadFileWaitTillLoaded(inFile, DataSourceType.FILE);
     assertTrue("Didn't read input file " + inFile, af != null);
     af.saveAlignment(tfile, FileFormat.Jalview);
     assertTrue("Failed to store as a project.",
@@ -237,12 +237,12 @@ public class AnnotatedPDBFileInputTest
         sq = sq.getDatasetSequence();
       }
       assertNotNull(sq.getAllPDBEntries());
-      assertEquals("Expected only one PDB ID", 1, sq.getAllPDBEntries()
-              .size());
+      assertEquals("Expected only one PDB ID", 1,
+              sq.getAllPDBEntries().size());
       for (PDBEntry pdbentry : sq.getAllPDBEntries())
       {
-        System.err.println("PDB Entry " + pdbentry.getId() + " "
-                + pdbentry.getFile());
+        System.err.println(
+                "PDB Entry " + pdbentry.getId() + " " + pdbentry.getFile());
         boolean exists = false, found = false;
         for (AlignmentAnnotation ana : sq.getAnnotation())
         {
@@ -259,8 +259,10 @@ public class AnnotatedPDBFileInputTest
         }
         if (exists)
         {
-          assertTrue("Couldn't find any annotation for " + pdbentry.getId()
-                  + " (file handle " + pdbentry.getFile() + ")", found);
+          assertTrue(
+                  "Couldn't find any annotation for " + pdbentry.getId()
+                          + " (file handle " + pdbentry.getFile() + ")",
+                  found);
         }
       }
     }