X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FAnnotatedPDBFileInputTest.java;h=6a61d2ce85194cddc1640a59af1e21b3149c936e;hb=b8f13fd9ac44853d6510eac85edb60b117dc4620;hp=29d5549c3e7641569c5de6c1ca269d35f2a67271;hpb=db60896e1fa3a55367b6af0f01dbdc22738e6802;p=jalview.git diff --git a/test/jalview/io/AnnotatedPDBFileInputTest.java b/test/jalview/io/AnnotatedPDBFileInputTest.java index 29d5549..6a61d2c 100644 --- a/test/jalview/io/AnnotatedPDBFileInputTest.java +++ b/test/jalview/io/AnnotatedPDBFileInputTest.java @@ -4,6 +4,14 @@ import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; + +import java.io.File; + +import org.junit.AfterClass; +import org.junit.Before; +import org.junit.BeforeClass; +import org.junit.Test; + import jalview.datamodel.AlignmentAnnotation; import jalview.datamodel.AlignmentI; import jalview.datamodel.PDBEntry; @@ -14,14 +22,6 @@ import jalview.gui.Desktop; import jalview.structure.StructureMapping; import jalview.structure.StructureSelectionManager; -import java.io.File; -import java.util.Vector; - -import org.junit.AfterClass; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; - public class AnnotatedPDBFileInputTest { @@ -38,8 +38,8 @@ public class AnnotatedPDBFileInputTest AlignFrame af = loader.LoadFileWaitTillLoaded(pdbStr, FormatAdapter.FILE); al = af.getViewport().getAlignment(); - pdbId = ((PDBEntry) al.getSequenceAt(0).getDatasetSequence().getPDBId() - .get(0)).getId(); + pdbId = al.getSequenceAt(0).getDatasetSequence().getPDBId() + .get(0).getId(); } @Test @@ -194,7 +194,7 @@ public class AnnotatedPDBFileInputTest } assertNotNull(sq.getPDBId()); assertEquals("Expected only one PDB ID", sq.getPDBId().size(), 1); - for (PDBEntry pdbentry : (Vector) sq.getPDBId()) + for (PDBEntry pdbentry : sq.getPDBId()) { System.err.println("PDB Entry " + pdbentry.getId() + " " + pdbentry.getFile());