X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FAnnotationFileIOTest.java;fp=test%2Fjalview%2Fio%2FAnnotationFileIOTest.java;h=105f6e48ff58ebe609b4fdbf2c2fcd72f2022daf;hb=c2e5d3d1ebe3b283bdde15637c590721cd6c5637;hp=885c6736752b47ee51da89ad735855c90f04de0a;hpb=557859a3ea9a1e86899ef2033de90eadb6d87118;p=jalview.git diff --git a/test/jalview/io/AnnotationFileIOTest.java b/test/jalview/io/AnnotationFileIOTest.java index 885c673..105f6e4 100644 --- a/test/jalview/io/AnnotationFileIOTest.java +++ b/test/jalview/io/AnnotationFileIOTest.java @@ -24,7 +24,7 @@ import static org.testng.AssertJUnit.assertNotNull; import static org.testng.AssertJUnit.assertTrue; import jalview.datamodel.AlignmentI; -import jalview.datamodel.ColumnSelection; +import jalview.datamodel.HiddenColumns; import jalview.gui.JvOptionPane; import jalview.io.AnnotationFile.ViewDef; @@ -115,7 +115,7 @@ public class AnnotationFileIOTest try { AlignmentI al = readAlignmentFile(f); - ColumnSelection cs = new ColumnSelection(); + HiddenColumns cs = new HiddenColumns(); assertTrue( "Test " + testname @@ -124,6 +124,7 @@ public class AnnotationFileIOTest DataSourceType.FILE)); AnnotationFile aff = new AnnotationFile(); + // ViewDef is not used by Jalview ViewDef v = aff.new ViewDef(null, al.getHiddenSequences(), cs, new Hashtable()); String anfileout = new AnnotationFile().printAnnotations(