X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FCrossRef2xmlTests.java;h=c55ddd95d63266f0e8379adbd33ba6637c09c635;hb=528c0f1815bc67b54618ad5b16c2162946974caf;hp=2063c88ddeefb0ff2cabf30551450b1d8df47b34;hpb=2cef2c13e720e889304333e70f893a23d1a98f42;p=jalview.git

diff --git a/test/jalview/io/CrossRef2xmlTests.java b/test/jalview/io/CrossRef2xmlTests.java
index 2063c88..c55ddd9 100644
--- a/test/jalview/io/CrossRef2xmlTests.java
+++ b/test/jalview/io/CrossRef2xmlTests.java
@@ -168,7 +168,7 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
             // perform crossref action, or retrieve stored project
             List<AlignmentViewPanel> cra_views = new ArrayList<AlignmentViewPanel>();
             CrossRefAction cra = null;
-            
+
             if (pass2 == 0)
             { // retrieve and show cross-refs in this thread
               cra = new CrossRefAction(af, seqs, dna, db);
@@ -248,7 +248,7 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
                       : new CrossRef(xrseqs, dataset)
                               .findXrefSourcesForSequences(avp
                                       .getAlignViewport().isNucleotide());
-              
+
               stringify(dbtoviewBit, savedProjects, nextxref, avp);
               xrptypes.put(nextxref, _xrptypes);
 
@@ -266,8 +266,8 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
                 {
                   List<AlignmentViewPanel> cra_views2 = new ArrayList<AlignmentViewPanel>();
                   int q = 0;
-                  String nextnextxref = nextxref
-                          + " -> " + xrefdb + "{" + q + "}";
+                  String nextnextxref = nextxref + " -> " + xrefdb + "{"
+                          + q + "}";
 
                   if (pass3 == 0)
                   {
@@ -284,8 +284,8 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
                     {
                       failedXrefMenuItems
                               .add("No crossrefs retrieved for '"
-                              + nextxref + "' to " + xrefdb + " via '"
-                              + nextaf.getTitle() + "'");
+                                      + nextxref + "' to " + xrefdb
+                                      + " via '" + nextaf.getTitle() + "'");
                       continue;
                     }
                     cra_views2 = cra.getXrefViews();
@@ -345,8 +345,8 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
 
                   for (AlignmentViewPanel nextavp : cra_views2)
                   {
-                    nextnextxref = nextxref
-                            + " -> " + xrefdb + "{" + q++ + "}";
+                    nextnextxref = nextxref + " -> " + xrefdb + "{" + q++
+                            + "}";
 
                     // verify references for this panel
                     AlignmentTest.assertAlignmentDatasetRefs(
@@ -471,8 +471,7 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
   {
     List<SequenceI> nonType = new ArrayList<SequenceI>();
     for (SequenceI sq : alignmentViewPanel.getAlignViewport()
-            .getAlignment()
-            .getSequences())
+            .getAlignment().getSequences())
     {
       if (sq.isProtein() != expectProtein)
       {
@@ -483,8 +482,7 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
     {
       Assert.fail(message + " [ "
               + (expectProtein ? "nucleotides were " : "proteins were ")
-              + nonType.toString()
-              + " ]");
+              + nonType.toString() + " ]");
     }
   }