X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FIdentifyFileTest.java;fp=test%2Fjalview%2Fio%2FIdentifyFileTest.java;h=cf7f58f36ded7413560a676af56963aa85406c71;hb=8946f41687f4c822ac8d15ee8551f23f156735c4;hp=5be7968299f08d62cb71c5cabc803c33e51531b3;hpb=f27f7be4c32780de615e2678f11a5e80702c5e25;p=jalview.git diff --git a/test/jalview/io/IdentifyFileTest.java b/test/jalview/io/IdentifyFileTest.java index 5be7968..cf7f58f 100644 --- a/test/jalview/io/IdentifyFileTest.java +++ b/test/jalview/io/IdentifyFileTest.java @@ -89,8 +89,7 @@ public class IdentifyFileTest @DataProvider(name = "identifyFiles") public Object[][] IdentifyFileDP() { - return new Object[][] { - { "examples/example.json", FileFormat.Json }, + return new Object[][] { { "examples/example.json", FileFormat.Json }, { "examples/plantfdx.fa", FileFormat.Fasta }, { "examples/dna_interleaved.phy", FileFormat.Phylip }, { "examples/2GIS.pdb", FileFormat.PDB }, @@ -107,13 +106,12 @@ public class IdentifyFileTest { "examples/testdata/simpleGff3.gff", FileFormat.Features }, { "examples/testdata/test.jvp", FileFormat.Jalview }, { "examples/testdata/test.cif", FileFormat.MMCif }, - { - "examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316", + { "examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316", FileFormat.Fasta }, { "resources/scoreModel/pam250.scm", FileFormat.ScoreMatrix }, { "resources/scoreModel/blosum80.scm", FileFormat.ScoreMatrix } - // { "examples/testdata/test.amsa", "AMSA" }, - // { "examples/test.jnet", "JnetFile" }, + // { "examples/testdata/test.amsa", "AMSA" }, + // { "examples/test.jnet", "JnetFile" }, }; } @@ -126,8 +124,8 @@ public class IdentifyFileTest // too few columns: assertFalse(id.looksLikeFeatureData("1 \t 2 \t 3 \t 4 \t 5")); // GFF format: - assertTrue(id - .looksLikeFeatureData("Seq1\tlocal\tHelix\t2456\t2462\tss")); + assertTrue( + id.looksLikeFeatureData("Seq1\tlocal\tHelix\t2456\t2462\tss")); // Jalview format: assertTrue(id.looksLikeFeatureData("Helix\tSeq1\t-1\t2456\t2462\tss")); // non-numeric start column: